Detailed information of deep learning profile BP000298.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Peyer's patch using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000298.1
Cell line/tissue: Peyer's patch
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR542SCB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.07 0.10 0.03 0.05 0.11 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.06 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.11 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3648 3558 3614 4706 4342 4171 3972 4017 3247 4165 4041 3163 3249 2974 4781 5743 1702 6820 1483 775 1363 1273 228 5995 156 114 792 6060 431 1809 127 885 2768 3673 7172 4504 5374 4112 3620 3507 4398 4035 5244 8023 5587 2982 3773 3509 4931 4765 ]
C [ 4877 4969 5300 4259 4018 4637 5009 4899 5080 2762 2549 4258 4822 7808 4057 5060 5210 2119 5429 9256 627 15094 16870 10070 10906 17120 1218 1368 5626 3040 161 985 8196 6840 2503 4782 3631 3997 4195 3953 3149 2680 4224 4049 4427 4571 3030 6714 6667 4706 ]
G [ 4900 4715 4463 4244 4111 4345 4446 5332 3526 6190 7531 6257 5260 3233 3506 3842 4457 6249 8996 834 13399 737 183 737 145 128 595 7603 10689 686 16926 14250 1771 3722 5842 4333 4018 4912 5445 5951 6799 8111 4347 2719 3427 3733 6218 4681 3048 4589 ]
T [ 4123 4306 4171 4339 5077 4395 4121 3300 5695 4431 3427 3870 4217 3533 5204 2903 6179 2360 1640 6683 2159 444 267 746 6341 186 14943 2517 802 12013 334 1428 4813 3313 2031 3929 4525 4527 4288 4137 3202 2722 3733 2757 4107 6262 4527 2644 2902 3488 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.02 0.02 -0.01 -0.04 -0.02 0.00 -0.03 0.01 -0.05 -0.03 -0.02 0.04 -0.04 -0.02 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.00 0.02 -0.00 0.01 0.02 -0.00 0.03 0.08 -0.02 0.08 0.11 0.06 0.09 0.11 0.02 -0.01 0.03 0.06 -0.01 -0.01 0.04 0.02 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.00 0.00 0.01 0.01 0.02 0.04 -0.02 0.08 -0.02 -0.02 0.00 -0.04 -0.01 0.00 0.04 0.07 -0.02 0.11 0.08 -0.00 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.02 0.01 -0.01 -0.03 -0.03 -0.04 0.03 -0.04 0.06 -0.01 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.02 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 706

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages