Detailed information of deep learning profile BP000298.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Peyer's patch using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000298.1
Cell line/tissue: Peyer's patch
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR542SCB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.11 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.06 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.11 0.05 0.03 0.10 0.07 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 3488 2902 2644 4527 6262 4107 2757 3733 2722 3202 4137 4288 4527 4525 3929 2031 3313 4813 1428 334 12013 802 2517 14943 186 6341 746 267 444 2159 6683 1640 2360 6179 2903 5204 3533 4217 3870 3427 4431 5695 3300 4121 4395 5077 4339 4171 4306 4123 ]
C [ 4589 3048 4681 6218 3733 3427 2719 4347 8111 6799 5951 5445 4912 4018 4333 5842 3722 1771 14250 16926 686 10689 7603 595 128 145 737 183 737 13399 834 8996 6249 4457 3842 3506 3233 5260 6257 7531 6190 3526 5332 4446 4345 4111 4244 4463 4715 4900 ]
G [ 4706 6667 6714 3030 4571 4427 4049 4224 2680 3149 3953 4195 3997 3631 4782 2503 6840 8196 985 161 3040 5626 1368 1218 17120 10906 10070 16870 15094 627 9256 5429 2119 5210 5060 4057 7808 4822 4258 2549 2762 5080 4899 5009 4637 4018 4259 5300 4969 4877 ]
T [ 4765 4931 3509 3773 2982 5587 8023 5244 4035 4398 3507 3620 4112 5374 4504 7172 3673 2768 885 127 1809 431 6060 792 114 156 5995 228 1273 1363 775 1483 6820 1702 5743 4781 2974 3249 3163 4041 4165 3247 4017 3972 4171 4342 4706 3614 3558 3648 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.01 0.06 -0.04 0.03 -0.04 -0.03 -0.03 -0.01 0.01 -0.02 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.00 0.08 0.11 -0.02 0.07 0.04 0.00 -0.01 -0.04 0.00 -0.02 -0.02 0.08 -0.02 0.04 0.02 0.01 0.01 0.00 0.00 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.02 0.04 -0.01 -0.01 0.06 0.03 -0.01 0.02 0.11 0.09 0.06 0.11 0.08 -0.02 0.08 0.03 -0.00 0.02 0.01 -0.00 0.02 0.00 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.04 0.04 -0.02 -0.03 -0.05 0.01 -0.03 0.00 -0.02 -0.04 -0.01 0.02 -0.02 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 706

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages