Detailed information of deep learning profile BP000297.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000297.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR541AMF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.05 0.08 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.04 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4132 4303 4171 3941 3904 4377 4348 4037 4173 4137 3720 4185 4156 3528 3830 3272 5157 6065 2258 7474 2063 1230 1545 1227 181 5292 225 209 1530 5838 826 3426 382 1412 3355 4126 5769 4397 4993 4495 4171 3968 4545 4375 4973 6297 5203 3869 4202 3970 ]
C [ 4792 4460 4516 4715 4780 4379 4347 4751 4780 4828 4629 3706 3465 5042 4679 7070 3836 4702 5412 1933 4903 8654 651 15485 17032 9530 11295 16913 2231 1966 6978 2653 483 1816 7044 5454 3036 4410 3799 4226 4289 4040 3518 3313 4134 4167 4218 4253 3667 5464 ]
G [ 4426 4297 4401 4441 4366 4219 4175 4093 4226 4566 4008 5207 5869 5115 4373 3581 3625 3702 4014 5497 8692 1198 12516 454 61 672 134 80 511 6635 7890 1483 15683 12189 2459 3932 5696 4784 4401 4618 4830 5207 5741 6312 4402 3556 3728 3954 5124 4544 ]
T [ 4185 4475 4447 4438 4485 4560 4665 4654 4356 4004 5178 4437 4045 3850 4653 3612 4917 3066 5851 2631 1877 6453 2823 369 261 2041 5881 333 13263 3096 1841 9973 987 2118 4677 4023 3034 3944 4342 4196 4245 4320 3731 3535 4026 3515 4386 5459 4542 3557 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.07 -0.03 0.00 -0.05 0.02 -0.09 -0.05 -0.03 0.06 -0.06 -0.02 -0.09 -0.04 -0.01 -0.01 0.02 0.01 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.02 0.04 0.13 -0.02 0.14 0.18 0.10 0.14 0.18 0.02 -0.02 0.05 0.06 -0.03 -0.03 0.05 0.03 -0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.05 -0.06 -0.01 -0.08 -0.04 -0.02 0.05 0.12 -0.02 0.18 0.12 -0.02 0.03 0.05 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.06 -0.06 -0.07 0.05 -0.06 0.09 -0.02 -0.03 0.03 -0.04 -0.01 0.02 -0.02 -0.02 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4656

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 402

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 200

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 187

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 119

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages