Detailed information of deep learning profile BP000297.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000297.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR541AMF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.04 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.08 0.05 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3557 4542 5459 4386 3515 4026 3535 3731 4320 4245 4196 4342 3944 3034 4023 4677 2118 987 9973 1841 3096 13263 333 5881 2041 261 369 2823 6453 1877 2631 5851 3066 4917 3612 4653 3850 4045 4437 5178 4004 4356 4654 4665 4560 4485 4438 4447 4475 4185 ]
C [ 4544 5124 3954 3728 3556 4402 6312 5741 5207 4830 4618 4401 4784 5696 3932 2459 12189 15683 1483 7890 6635 511 80 134 672 61 454 12516 1198 8692 5497 4014 3702 3625 3581 4373 5115 5869 5207 4008 4566 4226 4093 4175 4219 4366 4441 4401 4297 4426 ]
G [ 5464 3667 4253 4218 4167 4134 3313 3518 4040 4289 4226 3799 4410 3036 5454 7044 1816 483 2653 6978 1966 2231 16913 11295 9530 17032 15485 651 8654 4903 1933 5412 4702 3836 7070 4679 5042 3465 3706 4629 4828 4780 4751 4347 4379 4780 4715 4516 4460 4792 ]
T [ 3970 4202 3869 5203 6297 4973 4375 4545 3968 4171 4495 4993 4397 5769 4126 3355 1412 382 3426 826 5838 1530 209 225 5292 181 1227 1545 1230 2063 7474 2258 6065 5157 3272 3830 3528 4156 4185 3720 4137 4173 4037 4348 4377 3904 3941 4171 4303 4132 ]

Hypothetical CWM

   
A [ 0.00 -0.02 -0.02 0.02 -0.01 -0.04 0.03 -0.03 -0.02 0.09 -0.06 0.05 -0.07 -0.06 -0.06 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.05 0.03 -0.02 0.12 0.18 -0.02 0.12 0.05 -0.02 -0.04 -0.08 -0.01 -0.06 -0.05 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 -0.01 0.03 0.05 -0.03 -0.03 0.06 0.05 -0.02 0.02 0.18 0.14 0.10 0.18 0.14 -0.02 0.13 0.04 -0.02 0.03 0.02 0.00 0.04 0.01 ]
T [ 0.01 0.02 -0.01 -0.01 -0.04 -0.09 -0.02 -0.06 0.06 -0.03 -0.05 -0.09 0.02 -0.05 0.00 -0.03 -0.07 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4656

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 402

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 200

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 187

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 119

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages