Detailed information of deep learning profile BP000296.1

  1. Home
  2. Deep Learning Profile > BP000296.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in uterus using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000296.1
Cell line/tissue: uterus
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR527TPP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.05 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.05 0.04 0.14 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4660 4111 3838 5742 7506 5320 3873 4825 3956 4367 5186 5590 5777 5741 4979 2926 4459 5920 2143 614 14583 1154 3344 18030 233 8833 1009 273 423 3009 8756 1972 2791 7877 3606 6523 4627 5267 5030 4232 5514 7283 4297 5381 5959 6569 5775 5379 5558 5496 ]
C [ 4991 3689 5321 6558 4230 3866 3223 4984 8472 7293 6718 5974 5328 4451 4979 6488 4092 2168 16199 20088 869 12381 8084 555 54 178 650 68 681 15658 897 10801 7218 5237 4249 3786 3555 5935 7334 8790 7001 3887 5963 4851 4684 4396 4590 5013 5280 5348 ]
G [ 5343 7331 7105 3763 5035 4922 4611 4709 3234 3649 4546 4705 4619 4212 5353 3017 7503 9124 1337 229 3216 6998 1583 1508 20710 11957 11698 20594 18293 663 10515 6479 2102 5943 5576 4355 9088 5600 4656 2685 2940 5722 5530 5688 5119 4484 4534 5942 5585 5460 ]
T [ 6116 5979 4846 5047 4339 7002 9403 6592 5448 5801 4660 4841 5386 6706 5799 8679 5056 3898 1431 179 2442 577 8099 1017 113 142 7753 175 1713 1780 942 1858 8999 2053 7679 6446 3840 4308 4090 5403 5655 4218 5320 5190 5348 5661 6211 4776 4687 4806 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 0.00 -0.02 -0.02 0.02 -0.00 -0.02 0.03 -0.02 -0.01 0.07 -0.04 0.04 -0.05 -0.03 -0.04 -0.01 0.02 -0.02 -0.01 0.02 -0.02 0.01 -0.00 -0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.04 -0.00 0.09 0.14 -0.02 0.09 0.04 0.01 -0.01 -0.04 0.01 -0.03 -0.02 0.10 -0.02 0.05 0.03 0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.00 0.03 0.05 -0.02 -0.01 0.07 0.05 -0.00 0.02 0.14 0.10 0.08 0.14 0.10 -0.02 0.11 0.04 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.04 0.04 -0.03 -0.03 -0.06 0.02 -0.04 0.01 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages