Detailed information of deep learning profile BP000296.1

  1. Home
  2. Deep Learning Profile > BP000296.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in uterus using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000296.1
Cell line/tissue: uterus
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR527TPP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.14 0.04 0.05 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.08 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4806 4687 4776 6211 5661 5348 5190 5320 4218 5655 5403 4090 4308 3840 6446 7679 2053 8999 1858 942 1780 1713 175 7753 142 113 1017 8099 577 2442 179 1431 3898 5056 8679 5799 6706 5386 4841 4660 5801 5448 6592 9403 7002 4339 5047 4846 5979 6116 ]
C [ 5460 5585 5942 4534 4484 5119 5688 5530 5722 2940 2685 4656 5600 9088 4355 5576 5943 2102 6479 10515 663 18293 20594 11698 11957 20710 1508 1583 6998 3216 229 1337 9124 7503 3017 5353 4212 4619 4705 4546 3649 3234 4709 4611 4922 5035 3763 7105 7331 5343 ]
G [ 5348 5280 5013 4590 4396 4684 4851 5963 3887 7001 8790 7334 5935 3555 3786 4249 5237 7218 10801 897 15658 681 68 650 178 54 555 8084 12381 869 20088 16199 2168 4092 6488 4979 4451 5328 5974 6718 7293 8472 4984 3223 3866 4230 6558 5321 3689 4991 ]
T [ 5496 5558 5379 5775 6569 5959 5381 4297 7283 5514 4232 5030 5267 4627 6523 3606 7877 2791 1972 8756 3009 423 273 1009 8833 233 18030 3344 1154 14583 614 2143 5920 4459 2926 4979 5741 5777 5590 5186 4367 3956 4825 3873 5320 7506 5742 3838 4111 4660 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.01 -0.04 0.02 -0.06 -0.03 -0.03 0.04 -0.04 -0.02 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.00 0.04 0.11 -0.02 0.10 0.14 0.08 0.10 0.14 0.02 -0.00 0.05 0.07 -0.01 -0.02 0.05 0.03 0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.03 0.03 0.05 -0.02 0.10 -0.02 -0.03 0.01 -0.04 -0.01 0.01 0.04 0.09 -0.02 0.14 0.09 -0.00 0.04 0.04 0.02 0.01 0.01 0.02 ]
T [ -0.00 -0.00 0.01 -0.02 0.02 -0.01 -0.02 0.02 -0.01 -0.04 -0.03 -0.05 0.04 -0.04 0.07 -0.01 -0.02 0.03 -0.02 -0.00 0.02 -0.02 -0.02 0.00 0.00 0.01 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages