Detailed information of deep learning profile BP000295.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000295.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR525VXD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 -0.00 0.06 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.06 0.05 0.17 0.11 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4337 3916 3800 5250 6712 4853 3834 4418 3813 4112 4770 4912 5122 5237 4548 2940 4346 5374 2075 689 13012 1403 3373 15868 319 7968 1172 318 481 2944 8085 1820 2747 7117 3457 5823 4308 5007 4532 4252 5087 6394 4146 5058 5331 5778 5250 5085 5141 5020 ]
C [ 4656 3700 4997 5972 4153 3921 3337 4843 7608 6703 6019 5453 5114 4434 4896 6222 4139 2289 14667 18613 1107 10789 7081 648 110 193 901 109 876 14380 1011 10045 6527 4802 4056 3619 3499 5319 6475 7621 6415 3944 5367 4588 4524 4347 4584 4680 5046 5002 ]
G [ 4993 6594 6348 3775 4648 4622 4468 4561 3327 3714 4385 4669 4480 4124 5082 3118 6618 8436 1522 253 2964 6842 1719 1843 19133 11372 10893 19078 16709 749 9592 5817 2091 5693 5060 4239 8359 5246 4801 2884 3109 5344 5346 5388 5046 4425 4438 5441 5174 5230 ]
T [ 5758 5534 4599 4747 4231 6348 8105 5922 4996 5215 4570 4710 5028 5949 5218 7464 4641 3645 1480 189 2661 710 7571 1385 182 211 6778 239 1678 1671 1056 2062 8379 2132 7171 6063 3578 4172 3936 4987 5133 4062 4885 4710 4843 5194 5472 4538 4383 4492 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.01 0.09 -0.04 0.06 -0.06 -0.05 -0.06 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.01 -0.00 ]
C [ 0.02 0.02 0.01 0.02 0.05 0.04 -0.01 0.11 0.17 -0.02 0.12 0.05 0.00 -0.02 -0.05 0.01 -0.04 -0.02 0.13 -0.02 0.07 0.04 0.04 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.04 0.06 -0.02 -0.02 0.08 0.05 -0.01 0.03 0.17 0.13 0.10 0.17 0.13 -0.02 0.13 0.05 -0.00 0.03 0.02 -0.00 0.04 0.02 ]
T [ -0.00 -0.00 0.01 0.01 0.02 -0.01 -0.02 -0.03 -0.07 -0.03 -0.05 0.06 -0.03 -0.04 -0.08 0.03 -0.04 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 408

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 350

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 209

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 122

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 44

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages