Detailed information of deep learning profile BP000295.1

  1. Home
  2. Deep Learning Profile > BP000295.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000295.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR525VXD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.11 0.17 0.05 0.06 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4492 4383 4538 5472 5194 4843 4710 4885 4062 5133 4987 3936 4172 3578 6063 7171 2132 8379 2062 1056 1671 1678 239 6778 211 182 1385 7571 710 2661 189 1480 3645 4641 7464 5218 5949 5028 4710 4570 5215 4996 5922 8105 6348 4231 4747 4599 5534 5758 ]
C [ 5230 5174 5441 4438 4425 5046 5388 5346 5344 3109 2884 4801 5246 8359 4239 5060 5693 2091 5817 9592 749 16709 19078 10893 11372 19133 1843 1719 6842 2964 253 1522 8436 6618 3118 5082 4124 4480 4669 4385 3714 3327 4561 4468 4622 4648 3775 6348 6594 4993 ]
G [ 5002 5046 4680 4584 4347 4524 4588 5367 3944 6415 7621 6475 5319 3499 3619 4056 4802 6527 10045 1011 14380 876 109 901 193 110 648 7081 10789 1107 18613 14667 2289 4139 6222 4896 4434 5114 5453 6019 6703 7608 4843 3337 3921 4153 5972 4997 3700 4656 ]
T [ 5020 5141 5085 5250 5778 5331 5058 4146 6394 5087 4252 4532 5007 4308 5823 3457 7117 2747 1820 8085 2944 481 318 1172 7968 319 15868 3373 1403 13012 689 2075 5374 4346 2940 4548 5237 5122 4912 4770 4112 3813 4418 3834 4853 6712 5250 3800 3916 4337 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.04 0.03 -0.08 -0.04 -0.03 0.06 -0.05 -0.03 -0.07 -0.03 -0.02 -0.01 0.02 0.01 0.01 -0.00 -0.00 ]
C [ 0.02 0.04 -0.00 0.02 0.03 -0.00 0.05 0.13 -0.02 0.13 0.17 0.10 0.13 0.17 0.03 -0.01 0.05 0.08 -0.02 -0.02 0.06 0.04 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.04 0.04 0.07 -0.02 0.13 -0.02 -0.04 0.01 -0.05 -0.02 0.00 0.05 0.12 -0.02 0.17 0.11 -0.01 0.04 0.05 0.02 0.01 0.02 0.02 ]
T [ -0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.06 -0.05 -0.06 0.06 -0.04 0.09 -0.01 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 408

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 350

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 209

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 122

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 44

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages