Detailed information of deep learning profile BP000294.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in suprapubic skin using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000294.1
Cell line/tissue: suprapubic skin
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR515LRI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.06 0.10 0.03 0.04 0.09 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.00 0.02 -0.00 0.05 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.11 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 2180 2103 2147 2973 2715 2523 2347 2421 1853 2591 2419 1875 1869 1789 2757 3459 939 4061 807 393 768 752 113 3776 51 61 356 3541 192 862 43 433 1706 2179 4624 2784 3363 2529 2074 2022 2666 2412 3337 5332 3512 1709 2254 2109 3147 3044 ]
C [ 2982 3113 3341 2518 2370 2763 3133 3050 3262 1491 1368 2339 3082 5030 2477 3224 3206 1324 3479 5704 364 9306 10463 6203 6689 10584 677 759 3236 1891 47 492 5261 4585 1320 2976 2239 2392 2494 2370 1783 1481 2464 2418 2736 2729 1705 4360 4267 2838 ]
G [ 3037 2886 2836 2612 2437 2752 2745 3426 2037 4051 5020 4172 3380 1839 2190 2374 2778 4017 5485 473 8414 401 85 432 98 52 338 4960 7005 299 10620 9060 961 2133 3663 2590 2396 3102 3537 3896 4458 5385 2674 1499 1973 2254 3998 2899 1765 2929 ]
T [ 2591 2688 2466 2687 3268 2752 2565 1893 3638 2657 1983 2404 2459 2132 3366 1733 3867 1388 1019 4220 1244 331 129 379 3952 93 9419 1530 357 7738 80 805 2862 1893 1183 2440 2792 2767 2685 2502 1883 1512 2315 1541 2569 4098 2833 1422 1611 1979 ]

Hypothetical CWM

   
A [ -0.00 0.01 -0.03 0.02 -0.02 -0.04 -0.02 -0.01 -0.03 0.01 -0.06 -0.04 -0.05 0.03 -0.04 -0.03 -0.06 -0.03 -0.01 -0.00 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.00 0.01 0.01 -0.01 0.02 0.07 -0.02 0.07 0.10 0.06 0.08 0.10 0.01 -0.01 0.02 0.05 -0.02 -0.02 0.03 0.02 -0.01 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.01 0.02 0.03 -0.02 0.07 -0.02 -0.02 0.00 -0.04 -0.00 -0.01 0.03 0.07 -0.02 0.12 0.07 -0.01 0.02 0.03 0.01 0.01 0.01 0.01 ]
T [ 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.03 -0.04 -0.05 0.03 -0.03 0.06 -0.02 -0.03 0.02 -0.03 -0.01 0.01 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 229

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages