Detailed information of deep learning profile BP000294.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in suprapubic skin using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000294.1
Cell line/tissue: suprapubic skin
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR515LRI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.11 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.05 -0.00 0.02 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.00 -0.00 0.00 0.09 0.04 0.03 0.10 0.06 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 1979 1611 1422 2833 4098 2569 1541 2315 1512 1883 2502 2685 2767 2792 2440 1183 1893 2862 805 80 7738 357 1530 9419 93 3952 379 129 331 1244 4220 1019 1388 3867 1733 3366 2132 2459 2404 1983 2657 3638 1893 2565 2752 3268 2687 2466 2688 2591 ]
C [ 2929 1765 2899 3998 2254 1973 1499 2674 5385 4458 3896 3537 3102 2396 2590 3663 2133 961 9060 10620 299 7005 4960 338 52 98 432 85 401 8414 473 5485 4017 2778 2374 2190 1839 3380 4172 5020 4051 2037 3426 2745 2752 2437 2612 2836 2886 3037 ]
G [ 2838 4267 4360 1705 2729 2736 2418 2464 1481 1783 2370 2494 2392 2239 2976 1320 4585 5261 492 47 1891 3236 759 677 10584 6689 6203 10463 9306 364 5704 3479 1324 3206 3224 2477 5030 3082 2339 1368 1491 3262 3050 3133 2763 2370 2518 3341 3113 2982 ]
T [ 3044 3147 2109 2254 1709 3512 5332 3337 2412 2666 2022 2074 2529 3363 2784 4624 2179 1706 433 43 862 192 3541 356 61 51 3776 113 752 768 393 807 4061 939 3459 2757 1789 1869 1875 2419 2591 1853 2421 2347 2523 2715 2973 2147 2103 2180 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.01 -0.01 -0.03 0.02 -0.03 -0.02 0.06 -0.03 0.03 -0.05 -0.04 -0.03 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 ]
C [ 0.01 0.01 0.01 0.01 0.03 0.02 -0.01 0.07 0.12 -0.02 0.07 0.03 -0.01 -0.00 -0.04 0.00 -0.02 -0.02 0.07 -0.02 0.03 0.02 0.01 0.01 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.01 0.02 0.03 -0.02 -0.02 0.05 0.02 -0.01 0.01 0.10 0.08 0.06 0.10 0.07 -0.02 0.07 0.02 -0.01 0.01 0.01 0.00 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.00 -0.01 -0.03 -0.06 -0.03 -0.04 0.03 -0.05 -0.04 -0.06 0.01 -0.03 -0.01 -0.02 -0.04 -0.02 0.02 -0.03 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 229

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages