Detailed information of deep learning profile BP000292.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000292.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR505RTK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.05 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.10 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.20 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.09 -0.01 -0.00 0.04 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 ]

Frequency matrix

A [ 3797 3976 3756 3698 3832 4443 4235 4016 3921 4129 3486 4284 4181 3339 3518 3020 4921 5760 1914 6974 1804 1022 1584 1427 218 5743 199 127 1123 6011 608 2568 106 1176 3087 3978 5905 4412 4942 4231 3932 3858 4333 4168 4782 6667 5104 3456 3826 3760 ]
C [ 4452 4185 4370 4367 4499 3895 3751 4334 4495 4386 4424 2877 2709 4203 4450 6791 3568 4371 4865 1794 4745 7833 597 13973 15925 8739 9908 15979 1667 1452 6138 2190 137 1228 6890 5202 2722 3995 3347 3738 3919 3737 3160 2835 3889 3710 3958 3943 3240 5282 ]
G [ 4209 4037 4098 4148 4032 3818 3842 3764 3881 4487 3474 5077 6059 5241 4362 3073 3210 3435 3926 5291 8210 1038 11652 647 71 744 176 89 503 6332 8581 954 15859 12345 2002 3537 5282 4336 3958 4359 4499 4945 5554 6292 4101 2888 3448 3505 4936 4209 ]
T [ 4028 4288 4262 4273 4123 4330 4658 4372 4189 3484 5102 4248 3537 3703 4156 3602 4787 2920 5781 2427 1727 6593 2653 439 272 1260 6203 291 13193 2691 1159 10774 384 1737 4507 3769 2577 3743 4239 4158 4136 3946 3439 3191 3714 3221 3976 5582 4484 3235 ]

Hypothetical CWM

A [ -0.01 -0.01 0.01 0.03 -0.04 0.04 -0.02 -0.07 -0.02 0.01 -0.04 0.03 -0.07 -0.04 -0.04 0.07 -0.06 -0.03 -0.10 -0.04 -0.02 -0.01 0.03 0.01 0.01 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.01 0.05 0.13 -0.04 0.14 0.19 0.11 0.15 0.20 0.02 -0.03 0.05 0.08 -0.03 -0.04 0.06 0.04 -0.00 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.14 -0.04 -0.04 -0.00 -0.09 -0.03 -0.02 0.06 0.13 -0.04 0.21 0.13 -0.03 0.04 0.06 0.02 0.01 ]
T [ 0.00 -0.01 0.02 -0.02 0.04 -0.02 -0.02 0.03 -0.01 -0.05 -0.06 -0.07 0.06 -0.06 0.11 -0.02 -0.03 0.05 -0.03 -0.00 0.03 -0.02 -0.02 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2656

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 555

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 410

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 302

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages