Detailed information of deep learning profile BP000291.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in testis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000291.1
Cell line/tissue: testis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR494TNM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 -0.00 0.05 0.01 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.06 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.12 0.05 0.03 0.11 0.07 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4340 3740 3462 5756 7964 5250 3555 4736 3455 4031 5154 5409 5631 5613 4871 2683 4224 5955 1819 373 15131 863 3266 18308 202 8102 980 354 706 2936 8437 2192 2965 7663 3729 6410 4444 5088 4979 4251 5545 7231 4186 5280 5674 6407 5586 5201 5444 5322 ]
C [ 5314 3484 5550 7251 4251 3886 3079 5143 9671 8087 7011 6344 5659 4678 5164 6958 4246 2017 17338 20710 612 13097 8968 532 88 151 874 249 1034 15547 1256 10390 7380 5258 4441 4046 3804 6160 7540 8998 7283 4042 6239 5162 5031 4645 4925 5142 5479 5602 ]
G [ 5452 7946 7874 3451 5138 5155 4577 4826 3011 3537 4692 4903 4658 4290 5551 2762 8143 9773 1053 90 3374 6858 1390 1577 20890 12885 11996 20360 17863 987 10497 6746 2598 6154 5894 4804 9254 5875 4746 2845 3099 5977 5727 5843 5328 4694 4801 6286 5845 5687 ]
T [ 6181 6117 4401 4829 3934 6996 10076 6582 5150 5632 4430 4631 5339 6706 5701 8884 4674 3542 1077 114 2170 469 7663 870 107 149 7437 324 1684 1817 1097 1959 8344 2212 7223 6027 3785 4164 4022 5193 5360 4037 5135 5002 5254 5541 5975 4658 4519 4676 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.01 -0.02 -0.01 0.01 -0.01 -0.02 0.03 -0.02 -0.01 0.06 -0.04 0.03 -0.05 -0.04 -0.03 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.01 0.02 0.04 0.02 -0.01 0.09 0.13 -0.03 0.08 0.04 0.01 -0.00 -0.03 0.02 -0.01 -0.02 0.09 -0.01 0.04 0.02 0.01 0.01 0.00 0.00 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.03 0.04 -0.02 -0.01 0.07 0.05 -0.01 0.02 0.12 0.09 0.07 0.11 0.08 -0.02 0.08 0.02 -0.00 0.02 0.01 -0.00 0.02 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.01 -0.02 -0.06 -0.02 -0.05 0.04 -0.03 -0.03 -0.06 0.01 -0.03 0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 887

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 22

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages