Detailed information of deep learning profile BP000291.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in testis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000291.1
Cell line/tissue: testis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR494TNM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.07 0.11 0.03 0.05 0.12 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.06 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 0.05 -0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4676 4519 4658 5975 5541 5254 5002 5135 4037 5360 5193 4022 4164 3785 6027 7223 2212 8344 1959 1097 1817 1684 324 7437 149 107 870 7663 469 2170 114 1077 3542 4674 8884 5701 6706 5339 4631 4430 5632 5150 6582 10076 6996 3934 4829 4401 6117 6181 ]
C [ 5687 5845 6286 4801 4694 5328 5843 5727 5977 3099 2845 4746 5875 9254 4804 5894 6154 2598 6746 10497 987 17863 20360 11996 12885 20890 1577 1390 6858 3374 90 1053 9773 8143 2762 5551 4290 4658 4903 4692 3537 3011 4826 4577 5155 5138 3451 7874 7946 5452 ]
G [ 5602 5479 5142 4925 4645 5031 5162 6239 4042 7283 8998 7540 6160 3804 4046 4441 5258 7380 10390 1256 15547 1034 249 874 151 88 532 8968 13097 612 20710 17338 2017 4246 6958 5164 4678 5659 6344 7011 8087 9671 5143 3079 3886 4251 7251 5550 3484 5314 ]
T [ 5322 5444 5201 5586 6407 5674 5280 4186 7231 5545 4251 4979 5088 4444 6410 3729 7663 2965 2192 8437 2936 706 354 980 8102 202 18308 3266 863 15131 373 1819 5955 4224 2683 4871 5613 5631 5409 5154 4031 3455 4736 3555 5250 7964 5756 3462 3740 4340 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.02 -0.03 0.02 -0.01 -0.04 -0.02 0.00 -0.03 0.01 -0.06 -0.03 -0.03 0.04 -0.05 -0.02 -0.06 -0.02 -0.01 -0.01 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.02 -0.00 0.01 0.02 -0.00 0.02 0.08 -0.02 0.08 0.11 0.07 0.09 0.12 0.02 -0.01 0.05 0.07 -0.01 -0.02 0.04 0.03 -0.01 0.01 0.00 0.01 0.00 ]
G [ 0.01 0.00 0.00 0.01 0.01 0.02 0.04 -0.01 0.09 -0.02 -0.01 0.02 -0.03 -0.00 0.01 0.04 0.08 -0.03 0.13 0.09 -0.01 0.02 0.04 0.02 0.01 0.01 0.01 ]
T [ -0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.03 -0.04 -0.05 0.03 -0.04 0.06 -0.01 -0.02 0.03 -0.02 -0.01 0.01 -0.01 -0.02 -0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 887

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 22

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages