Detailed information of deep learning profile BP000290.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in ovary using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000290.1
Cell line/tissue: ovary
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR493APD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.12 -0.00 0.04 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.06 -0.00 0.02 0.01 0.00 -0.00 ]
G [ -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.12 0.05 0.03 0.11 0.07 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

A [ 3659 3231 2973 4821 6575 4393 3074 4000 2975 3493 4258 4585 4763 4850 4160 2305 3594 4962 1673 357 12713 890 2854 15415 229 7236 917 280 439 2398 7229 1724 2428 6631 3073 5556 3736 4327 4166 3396 4472 6269 3479 4504 4943 5555 4740 4359 4647 4555 ]
C [ 4622 3142 4736 6218 3755 3404 2722 4386 8195 6858 6166 5560 4926 4020 4347 5886 3626 1913 14336 17605 745 10725 7517 594 85 142 783 167 623 13807 823 9234 6509 4605 3855 3544 3211 5356 6593 7944 6471 3460 5479 4384 4348 3979 4177 4433 4744 4825 ]
G [ 4802 6762 6704 3087 4474 4481 4033 4169 2708 3134 4048 4185 4074 3696 4798 2580 6958 8218 1179 168 2853 6160 1461 1400 17846 10744 9980 17588 15803 604 9371 5814 2017 5372 5163 4024 8123 5039 4143 2448 2625 5195 5025 5102 4471 4035 4168 5522 5086 4930 ]
T [ 5174 5122 3844 4131 3453 5979 8428 5702 4379 4772 3785 3927 4494 5691 4952 7486 4079 3164 1069 127 1946 482 6425 848 97 135 6577 222 1392 1448 834 1485 7303 1649 6166 5133 3187 3535 3355 4469 4689 3333 4274 4267 4495 4688 5172 3943 3780 3947 ]

Hypothetical CWM

A [ 0.00 0.00 0.00 0.00 -0.01 -0.01 0.02 -0.00 -0.02 0.03 -0.01 -0.01 0.06 -0.03 0.04 -0.04 -0.03 -0.03 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.01 0.02 0.04 0.02 -0.01 0.08 0.12 -0.03 0.08 0.04 0.01 -0.01 -0.03 0.01 -0.01 -0.01 0.08 -0.01 0.04 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.03 0.04 -0.01 -0.01 0.07 0.04 -0.01 0.02 0.12 0.09 0.07 0.11 0.08 -0.02 0.08 0.03 -0.01 0.02 0.01 -0.00 0.02 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.01 -0.00 -0.01 -0.02 -0.05 -0.02 -0.04 0.04 -0.03 -0.03 -0.05 0.01 -0.03 0.00 -0.01 -0.04 -0.01 0.03 -0.03 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1427

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages