Detailed information of deep learning profile BP000289.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in thyroid gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000289.1
Cell line/tissue: thyroid gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR492ZIW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.06 0.05 0.14 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4270 3816 3608 5403 6519 4622 3634 4309 3532 3996 4429 4808 4898 4839 4246 2797 4182 5176 1842 558 12109 1280 2910 15213 285 6644 1446 507 898 3261 7364 2224 2995 6528 3564 5502 4203 4754 4327 4146 4958 5766 4132 4733 5047 5218 4811 4839 4897 4891 ]
C [ 4379 3261 4835 5583 3921 3754 3145 4564 7673 6399 5731 5041 4972 4324 4872 6091 3975 2131 14330 17782 953 10447 7357 487 96 271 879 397 1516 12242 1729 8554 5824 4385 3837 3503 3477 4954 5931 6689 5627 3919 5015 4473 4255 4249 4419 4433 4597 4603 ]
G [ 4497 6375 5891 3356 4345 4236 4029 4258 2859 3262 4107 4337 4030 3762 4465 2772 6025 7879 1250 174 2729 6365 1404 1815 18100 11404 10292 17252 14450 1246 8186 5549 2437 5287 4924 4245 7400 4984 4555 3060 3252 4874 4877 5042 4674 4276 4348 4949 4842 4856 ]
T [ 5527 5221 4339 4331 3888 6061 7865 5542 4609 5016 4406 4487 4773 5748 5090 7013 4491 3487 1251 159 2882 581 7002 1158 192 354 6056 517 1809 1924 1394 2346 7417 2473 6348 5423 3593 3981 3860 4778 4836 4114 4649 4425 4697 4930 5095 4452 4337 4323 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.01 0.09 -0.04 0.04 -0.06 -0.04 -0.04 -0.01 0.02 -0.01 -0.02 0.02 -0.01 0.01 0.00 0.00 ]
C [ 0.01 0.01 0.02 0.04 0.03 -0.02 0.11 0.17 -0.01 0.12 0.05 0.00 -0.02 -0.06 0.01 -0.03 -0.03 0.11 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.00 0.04 0.05 -0.02 -0.01 0.07 0.05 -0.01 0.03 0.17 0.12 0.09 0.15 0.11 -0.02 0.10 0.04 -0.00 0.03 0.02 0.00 0.04 0.02 ]
T [ 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.03 -0.03 -0.06 0.02 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1058

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 130

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 106

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages