Detailed information of deep learning profile BP000289.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in thyroid gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000289.1
Cell line/tissue: thyroid gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR492ZIW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.14 0.05 0.06 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4323 4337 4452 5095 4930 4697 4425 4649 4114 4836 4778 3860 3981 3593 5423 6348 2473 7417 2346 1394 1924 1809 517 6056 354 192 1158 7002 581 2882 159 1251 3487 4491 7013 5090 5748 4773 4487 4406 5016 4609 5542 7865 6061 3888 4331 4339 5221 5527 ]
C [ 4856 4842 4949 4348 4276 4674 5042 4877 4874 3252 3060 4555 4984 7400 4245 4924 5287 2437 5549 8186 1246 14450 17252 10292 11404 18100 1815 1404 6365 2729 174 1250 7879 6025 2772 4465 3762 4030 4337 4107 3262 2859 4258 4029 4236 4345 3356 5891 6375 4497 ]
G [ 4603 4597 4433 4419 4249 4255 4473 5015 3919 5627 6689 5931 4954 3477 3503 3837 4385 5824 8554 1729 12242 1516 397 879 271 96 487 7357 10447 953 17782 14330 2131 3975 6091 4872 4324 4972 5041 5731 6399 7673 4564 3145 3754 3921 5583 4835 3261 4379 ]
T [ 4891 4897 4839 4811 5218 5047 4733 4132 5766 4958 4146 4327 4754 4203 5502 3564 6528 2995 2224 7364 3261 898 507 1446 6644 285 15213 2910 1280 12109 558 1842 5176 4182 2797 4246 4839 4898 4808 4429 3996 3532 4309 3634 4622 6519 5403 3608 3816 4270 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.02 -0.06 -0.03 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.00 0.04 0.10 -0.02 0.11 0.15 0.09 0.12 0.17 0.03 -0.01 0.05 0.07 -0.01 -0.02 0.05 0.04 0.00 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.11 -0.03 -0.03 0.01 -0.06 -0.02 0.00 0.05 0.12 -0.01 0.17 0.11 -0.02 0.03 0.04 0.02 0.01 0.01 ]
T [ 0.00 0.00 0.01 -0.01 0.02 -0.02 -0.01 0.02 -0.01 -0.04 -0.04 -0.06 0.04 -0.04 0.09 -0.01 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1058

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 130

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 106

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages