Detailed information of deep learning profile BP000288.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in glutamatergic neuron using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000288.1
Cell line/tissue: glutamatergic neuron
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR489QDF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.00 0.02 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.13 0.07 0.05 0.11 0.06 0.00 0.03 0.01 -0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 3864 3196 2968 4654 6351 4251 3111 4013 2899 3541 4081 4212 4231 4360 3656 2421 3501 4998 1475 461 11059 1208 2560 13887 214 4790 1607 617 1334 3447 5486 2519 3160 5292 3480 4596 3821 4353 3967 3871 4552 5004 3883 4273 4343 4401 4352 4401 4394 4285 ]
C [ 3990 2786 4258 5537 3420 3226 2694 4075 7735 6283 5294 4664 4456 3959 4779 5808 4123 1903 13512 16109 907 9371 6673 362 98 137 915 600 1774 9667 2376 7293 4822 3835 3414 3467 3483 4312 4845 5353 4707 3741 4406 4069 3964 4062 4084 4039 4223 4231 ]
G [ 3994 5994 6004 2862 3809 4021 3431 3746 2378 2792 3787 4013 3684 3395 3929 2423 5473 6952 987 197 2093 5827 1109 1720 16451 11676 10120 14746 11981 1646 7195 4388 2639 4889 4518 3980 6072 4429 4441 3401 3529 4366 4412 4453 4398 3911 3979 4453 4399 4294 ]
T [ 5076 4948 3694 3871 3344 5426 7688 5090 3912 4308 3762 4035 4553 5210 4560 6272 3827 3071 950 157 2865 518 6582 955 161 321 4282 961 1835 2164 1867 2724 6303 2908 5512 4881 3548 3830 3671 4299 4136 3813 4223 4129 4219 4550 4509 4031 3908 4114 ]

Hypothetical CWM

   
A [ 0.02 0.00 -0.01 0.01 -0.01 -0.01 -0.00 0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.08 -0.05 0.03 -0.04 -0.04 -0.03 -0.01 0.01 -0.01 -0.01 0.02 -0.01 ]
C [ -0.00 -0.01 -0.02 0.00 0.04 0.03 0.02 0.02 0.01 0.01 0.02 0.04 0.03 -0.02 0.10 0.14 -0.02 0.09 0.04 -0.02 -0.02 -0.06 -0.01 -0.03 -0.02 0.07 -0.01 0.03 0.02 0.01 0.00 ]
G [ 0.00 0.00 -0.01 -0.01 -0.02 -0.00 0.01 0.00 0.01 0.01 0.01 -0.01 0.03 0.04 -0.02 -0.02 0.06 0.04 -0.02 0.02 0.14 0.10 0.08 0.11 0.08 -0.01 0.07 0.02 -0.00 0.01 0.01 ]
T [ -0.01 0.01 0.03 0.01 0.00 0.00 -0.00 0.00 0.01 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.05 -0.04 -0.04 -0.05 0.00 -0.03 -0.00 -0.02 -0.03 -0.01 0.02 -0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 742

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages