Detailed information of deep learning profile BP000288.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in glutamatergic neuron using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000288.1
Cell line/tissue: glutamatergic neuron
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR489QDF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 -0.00 0.01 0.03 0.00 0.06 0.11 0.05 0.07 0.13 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.02 0.00 0.05 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.08 -0.00 0.00 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4114 3908 4031 4509 4550 4219 4129 4223 3813 4136 4299 3671 3830 3548 4881 5512 2908 6303 2724 1867 2164 1835 961 4282 321 161 955 6582 518 2865 157 950 3071 3827 6272 4560 5210 4553 4035 3762 4308 3912 5090 7688 5426 3344 3871 3694 4948 5076 ]
C [ 4294 4399 4453 3979 3911 4398 4453 4412 4366 3529 3401 4441 4429 6072 3980 4518 4889 2639 4388 7195 1646 11981 14746 10120 11676 16451 1720 1109 5827 2093 197 987 6952 5473 2423 3929 3395 3684 4013 3787 2792 2378 3746 3431 4021 3809 2862 6004 5994 3994 ]
G [ 4231 4223 4039 4084 4062 3964 4069 4406 3741 4707 5353 4845 4312 3483 3467 3414 3835 4822 7293 2376 9667 1774 600 915 137 98 362 6673 9371 907 16109 13512 1903 4123 5808 4779 3959 4456 4664 5294 6283 7735 4075 2694 3226 3420 5537 4258 2786 3990 ]
T [ 4285 4394 4401 4352 4401 4343 4273 3883 5004 4552 3871 3967 4353 3821 4596 3480 5292 3160 2519 5486 3447 1334 617 1607 4790 214 13887 2560 1208 11059 461 1475 4998 3501 2421 3656 4360 4231 4212 4081 3541 2899 4013 3111 4251 6351 4654 2968 3196 3864 ]

Hypothetical CWM

   
A [ 0.01 -0.02 0.02 -0.01 -0.03 -0.02 -0.00 -0.03 0.00 -0.05 -0.04 -0.04 0.05 -0.05 -0.02 -0.06 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.01 0.00 -0.00 0.00 0.00 0.01 0.03 0.01 -0.01 ]
C [ 0.01 0.01 -0.00 0.02 0.07 -0.01 0.08 0.11 0.08 0.10 0.14 0.02 -0.02 0.04 0.06 -0.02 -0.02 0.04 0.03 -0.01 0.01 0.01 0.01 0.00 0.01 -0.00 -0.02 -0.01 -0.01 0.00 0.00 ]
G [ 0.00 0.01 0.02 0.03 -0.01 0.07 -0.02 -0.03 -0.01 -0.06 -0.02 -0.02 0.04 0.09 -0.02 0.14 0.10 -0.02 0.03 0.04 0.02 0.01 0.01 0.02 0.02 0.03 0.04 0.00 -0.02 -0.01 -0.00 ]
T [ -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.03 -0.04 -0.04 0.03 -0.05 0.08 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 0.00 -0.00 -0.01 -0.01 0.01 -0.01 0.00 0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 742

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages