Detailed information of deep learning profile BP000287.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in suprapubic skin using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000287.1
Cell line/tissue: suprapubic skin
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR485VQV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.16 0.11 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3791 3285 3169 4534 5914 4235 3149 3795 3139 3441 3970 4311 4404 4431 3875 2444 3739 4688 1640 429 11155 1111 2711 13730 233 6597 1155 269 392 2539 6788 1720 2429 6012 2939 4916 3582 4255 3891 3506 4308 5439 3537 4196 4545 4902 4454 4303 4348 4361 ]
C [ 3924 2880 4209 5131 3393 3239 2735 4005 6570 5719 5191 4572 4223 3744 4286 5267 3463 1923 12675 15957 927 9036 6316 480 89 164 787 93 571 12019 865 8376 5242 3989 3390 3173 3060 4478 5457 6245 5282 3490 4566 3891 3706 3647 3785 4001 4208 4127 ]
G [ 4102 5774 5564 3068 3968 3880 3612 3852 2673 2972 3631 3810 3719 3400 3941 2589 5400 6927 1216 174 2313 6009 1422 1482 16242 9770 8731 16119 14396 570 8180 4950 1790 4893 4271 3553 6920 4395 4009 2624 2831 4282 4373 4501 4269 3733 3837 4505 4400 4290 ]
T [ 4881 4759 3756 3965 3423 5344 7202 5046 4316 4566 3906 4005 4352 5123 4596 6398 4096 3160 1167 138 2303 542 6249 1006 134 167 6025 217 1339 1570 865 1652 7237 1804 6098 5056 3136 3570 3341 4323 4277 3487 4222 4110 4178 4416 4622 3889 3742 3920 ]

Hypothetical CWM

   
A [ -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.09 -0.06 0.05 -0.06 -0.04 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.02 0.05 0.03 -0.01 0.11 0.17 -0.03 0.11 0.05 -0.01 -0.02 -0.07 -0.00 -0.04 -0.03 0.12 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.02 0.00 0.04 0.05 -0.03 -0.02 0.08 0.05 -0.02 0.02 0.17 0.13 0.09 0.16 0.12 -0.02 0.12 0.04 -0.00 0.03 0.02 0.00 0.04 0.01 ]
T [ 0.01 0.02 -0.00 -0.01 -0.03 -0.08 -0.03 -0.06 0.06 -0.03 -0.04 -0.08 0.02 -0.04 0.00 -0.02 -0.06 -0.01 0.03 -0.04 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1989

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 170

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 82

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 61

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 51

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages