Detailed information of deep learning profile BP000287.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in suprapubic skin using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000287.1
Cell line/tissue: suprapubic skin
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR485VQV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.11 0.16 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 3920 3742 3889 4622 4416 4178 4110 4222 3487 4277 4323 3341 3570 3136 5056 6098 1804 7237 1652 865 1570 1339 217 6025 167 134 1006 6249 542 2303 138 1167 3160 4096 6398 4596 5123 4352 4005 3906 4566 4316 5046 7202 5344 3423 3965 3756 4759 4881 ]
C [ 4290 4400 4505 3837 3733 4269 4501 4373 4282 2831 2624 4009 4395 6920 3553 4271 4893 1790 4950 8180 570 14396 16119 8731 9770 16242 1482 1422 6009 2313 174 1216 6927 5400 2589 3941 3400 3719 3810 3631 2972 2673 3852 3612 3880 3968 3068 5564 5774 4102 ]
G [ 4127 4208 4001 3785 3647 3706 3891 4566 3490 5282 6245 5457 4478 3060 3173 3390 3989 5242 8376 865 12019 571 93 787 164 89 480 6316 9036 927 15957 12675 1923 3463 5267 4286 3744 4223 4572 5191 5719 6570 4005 2735 3239 3393 5131 4209 2880 3924 ]
T [ 4361 4348 4303 4454 4902 4545 4196 3537 5439 4308 3506 3891 4255 3582 4916 2939 6012 2429 1720 6788 2539 392 269 1155 6597 233 13730 2711 1111 11155 429 1640 4688 3739 2444 3875 4431 4404 4311 3970 3441 3139 3795 3149 4235 5914 4534 3169 3285 3791 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.04 0.03 -0.01 -0.06 -0.02 0.00 -0.04 0.02 -0.08 -0.04 -0.03 0.06 -0.06 -0.03 -0.08 -0.03 -0.01 -0.00 0.02 0.01 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.00 0.04 0.12 -0.02 0.12 0.16 0.09 0.13 0.17 0.02 -0.02 0.05 0.08 -0.02 -0.03 0.05 0.04 0.00 0.02 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.12 -0.03 -0.04 -0.00 -0.07 -0.02 -0.01 0.05 0.11 -0.03 0.17 0.11 -0.01 0.03 0.05 0.02 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.04 -0.06 0.05 -0.06 0.09 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1989

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 170

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 82

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 61

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 51

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages