Detailed information of deep learning profile BP000286.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in body of pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000286.1
Cell line/tissue: body of pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR484DDO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.14 0.04 0.07 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4848 4756 4780 5477 5294 5074 4969 5044 4547 5393 5253 4175 4388 3979 6067 6921 2884 8316 2801 1610 2311 1889 647 6686 358 227 1620 7556 765 3380 199 1356 3804 5005 7435 5489 6119 5417 4958 4902 5371 5006 6172 8579 6344 4214 4788 4545 6019 5977 ]
C [ 5498 5591 5680 5130 5069 5591 5788 5799 5647 4133 3824 5367 5722 8414 5011 5692 6352 2918 6041 9857 1620 16291 19304 11331 13393 20344 2267 1901 7503 3525 212 1527 8939 6749 3351 5203 4482 4847 5052 4756 3831 3682 4985 4745 5201 4948 4049 7084 6958 5270 ]
G [ 5445 5439 5322 5032 5041 4952 5101 5695 4705 6205 7397 6739 5572 4121 4148 4542 5046 6400 9836 2056 13375 1881 484 1301 286 149 656 8371 11346 1241 20032 16153 2590 4713 7154 5725 5195 5587 5824 6380 7466 8451 5120 3796 4356 4619 6694 5460 3958 5184 ]
T [ 5291 5296 5300 5443 5678 5465 5224 4544 6183 5351 4608 4801 5400 4568 5856 3927 6800 3448 2404 7559 3776 1021 647 1764 7045 362 16539 3254 1468 12936 639 2046 5749 4615 3142 4665 5286 5231 5248 5044 4414 3943 4805 3962 5181 7301 5551 3993 4147 4651 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.03 -0.07 -0.04 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.00 0.02 0.02 -0.00 0.04 0.11 -0.01 0.11 0.15 0.09 0.12 0.16 0.02 -0.02 0.05 0.07 -0.03 -0.03 0.05 0.03 -0.01 0.01 0.00 0.01 0.01 ]
G [ 0.01 0.00 0.01 0.01 0.03 0.03 0.05 -0.02 0.10 -0.02 -0.03 0.00 -0.06 -0.02 -0.01 0.05 0.10 -0.02 0.16 0.11 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.01 -0.02 0.02 -0.01 -0.05 -0.04 -0.06 0.04 -0.04 0.08 -0.02 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 462

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 265

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages