Detailed information of deep learning profile BP000286.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in body of pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000286.1
Cell line/tissue: body of pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR484DDO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.07 0.04 0.14 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4651 4147 3993 5551 7301 5181 3962 4805 3943 4414 5044 5248 5231 5286 4665 3142 4615 5749 2046 639 12936 1468 3254 16539 362 7045 1764 647 1021 3776 7559 2404 3448 6800 3927 5856 4568 5400 4801 4608 5351 6183 4544 5224 5465 5678 5443 5300 5296 5291 ]
C [ 5184 3958 5460 6694 4619 4356 3796 5120 8451 7466 6380 5824 5587 5195 5725 7154 4713 2590 16153 20032 1241 11346 8371 656 149 286 1301 484 1881 13375 2056 9836 6400 5046 4542 4148 4121 5572 6739 7397 6205 4705 5695 5101 4952 5041 5032 5322 5439 5445 ]
G [ 5270 6958 7084 4049 4948 5201 4745 4985 3682 3831 4756 5052 4847 4482 5203 3351 6749 8939 1527 212 3525 7503 1901 2267 20344 13393 11331 19304 16291 1620 9857 6041 2918 6352 5692 5011 8414 5722 5367 3824 4133 5647 5799 5788 5591 5069 5130 5680 5591 5498 ]
T [ 5977 6019 4545 4788 4214 6344 8579 6172 5006 5371 4902 4958 5417 6119 5489 7435 5005 3804 1356 199 3380 765 7556 1620 227 358 6686 647 1889 2311 1610 2801 8316 2884 6921 6067 3979 4388 4175 5253 5393 4547 5044 4969 5074 5294 5477 4780 4756 4848 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.02 0.08 -0.04 0.04 -0.06 -0.04 -0.05 -0.01 0.02 -0.02 -0.01 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.11 0.16 -0.02 0.10 0.05 -0.01 -0.02 -0.06 0.00 -0.03 -0.02 0.10 -0.02 0.05 0.03 0.03 0.01 0.01 0.00 0.01 ]
G [ 0.01 0.01 0.00 0.01 -0.01 0.03 0.05 -0.03 -0.03 0.07 0.05 -0.02 0.02 0.16 0.12 0.09 0.15 0.11 -0.01 0.11 0.04 -0.00 0.02 0.02 0.00 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.07 -0.02 -0.05 0.05 -0.03 -0.04 -0.07 0.03 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 462

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 265

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages