Detailed information of deep learning profile BP000285.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000285.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR482PMN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.14 0.05 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.08 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4400 4390 4489 5320 5050 4787 4788 4822 4099 5088 4872 3893 4122 3712 5573 6779 2463 7778 2314 1349 1969 1743 503 6272 285 194 1125 7174 586 2616 156 1251 3483 4642 7302 5211 5985 5056 4547 4440 5114 4771 5848 8457 5998 3915 4482 4365 5509 5654 ]
C [ 5024 5088 5248 4461 4417 4993 5258 5168 5083 3314 3075 4765 5162 7817 4420 5099 5539 2436 5780 8831 1306 15437 17889 10915 11702 18807 1858 1454 6526 2988 217 1236 8257 6318 2841 4760 3932 4210 4491 4197 3385 3061 4336 4147 4746 4531 3491 6545 6638 4833 ]
G [ 4872 4865 4646 4491 4381 4420 4548 5276 4044 5952 7271 6281 5187 3583 3818 3901 4656 6227 9129 1705 12891 1404 459 897 250 115 490 7632 11017 967 18465 15001 2149 4128 6447 4893 4415 5023 5406 6034 6825 7995 4688 3152 3775 3980 6134 4869 3387 4568 ]
T [ 5080 5033 4993 5104 5528 5176 4782 4110 6150 5022 4158 4437 4905 4264 5565 3597 6718 2935 2153 7491 3210 792 525 1292 7139 260 15903 3116 1247 12805 538 1888 5487 4288 2786 4512 5044 5087 4932 4705 4052 3549 4504 3620 4857 6950 5269 3597 3842 4321 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.00 -0.04 0.02 -0.07 -0.04 -0.04 0.05 -0.05 -0.03 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.00 0.04 0.11 -0.02 0.11 0.15 0.09 0.12 0.16 0.03 -0.01 0.05 0.07 -0.01 -0.02 0.05 0.03 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.03 0.05 -0.02 0.11 -0.02 -0.03 0.01 -0.05 -0.01 0.00 0.05 0.10 -0.02 0.16 0.10 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.04 -0.06 0.04 -0.04 0.08 -0.01 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 266

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 27

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages