Detailed information of deep learning profile BP000285.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000285.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR482PMN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.06 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.08 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.05 0.14 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4321 3842 3597 5269 6950 4857 3620 4504 3549 4052 4705 4932 5087 5044 4512 2786 4288 5487 1888 538 12805 1247 3116 15903 260 7139 1292 525 792 3210 7491 2153 2935 6718 3597 5565 4264 4905 4437 4158 5022 6150 4110 4782 5176 5528 5104 4993 5033 5080 ]
C [ 4568 3387 4869 6134 3980 3775 3152 4688 7995 6825 6034 5406 5023 4415 4893 6447 4128 2149 15001 18465 967 11017 7632 490 115 250 897 459 1404 12891 1705 9129 6227 4656 3901 3818 3583 5187 6281 7271 5952 4044 5276 4548 4420 4381 4491 4646 4865 4872 ]
G [ 4833 6638 6545 3491 4531 4746 4147 4336 3061 3385 4197 4491 4210 3932 4760 2841 6318 8257 1236 217 2988 6526 1454 1858 18807 11702 10915 17889 15437 1306 8831 5780 2436 5539 5099 4420 7817 5162 4765 3075 3314 5083 5168 5258 4993 4417 4461 5248 5088 5024 ]
T [ 5654 5509 4365 4482 3915 5998 8457 5848 4771 5114 4440 4547 5056 5985 5211 7302 4642 3483 1251 156 2616 586 7174 1125 194 285 6272 503 1743 1969 1349 2314 7778 2463 6779 5573 3712 4122 3893 4872 5088 4099 4822 4788 4787 5050 5320 4489 4390 4400 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.01 0.08 -0.04 0.04 -0.06 -0.04 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.10 0.16 -0.02 0.10 0.05 0.00 -0.01 -0.05 0.01 -0.03 -0.02 0.11 -0.02 0.05 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.01 0.07 0.05 -0.01 0.03 0.16 0.12 0.09 0.15 0.11 -0.02 0.11 0.04 -0.00 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.03 -0.05 0.05 -0.04 -0.04 -0.07 0.02 -0.04 0.00 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 266

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 27

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages