Detailed information of deep learning profile BP000284.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000284.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR473DVS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.05 0.14 0.09 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4202 3542 3265 5195 7023 4784 3311 4388 3355 3761 4587 4941 5132 5142 4432 2502 4013 5363 1760 361 13468 943 2946 16289 259 7767 921 313 507 2758 7880 1917 2614 7000 3406 5866 4121 4786 4450 3828 5088 6487 3913 4812 5210 5801 5060 4807 4967 4918 ]
C [ 4542 3206 4819 6096 3814 3414 2801 4520 8060 6870 6135 5448 4903 4031 4579 6035 3723 1885 15058 18441 774 11424 7394 491 65 158 611 147 864 13770 1083 9505 6416 4615 3773 3452 3277 5276 6529 7798 6308 3694 5413 4419 4290 4090 4271 4515 4840 4900 ]
G [ 4758 6799 6651 3262 4477 4487 4132 4209 2809 3185 4142 4305 4151 3744 4785 2672 6815 8359 1094 121 2618 6169 1294 1383 18592 10949 10622 18321 16083 751 9107 5811 1901 5387 5063 4116 8170 5081 4373 2563 2683 5124 4997 5194 4751 4036 4167 5404 5024 4898 ]
T [ 5528 5483 4295 4477 3716 6345 8786 5913 4806 5214 4166 4336 4844 6113 5234 7821 4479 3423 1118 107 2170 494 7396 867 114 156 6876 249 1576 1751 960 1797 8099 2028 6788 5596 3462 3887 3678 4841 4951 3725 4707 4605 4779 5103 5532 4304 4199 4314 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.08 -0.04 0.04 -0.06 -0.05 -0.04 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.01 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.10 0.15 -0.03 0.10 0.04 -0.01 -0.02 -0.06 -0.00 -0.03 -0.03 0.10 -0.02 0.05 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.02 0.07 0.04 -0.01 0.02 0.15 0.11 0.08 0.15 0.10 -0.02 0.10 0.03 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 -0.00 0.01 0.00 0.02 -0.01 -0.02 -0.03 -0.07 -0.03 -0.05 0.05 -0.03 -0.04 -0.07 0.02 -0.04 0.00 -0.02 -0.06 -0.02 0.03 -0.03 0.02 0.00 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages