Detailed information of deep learning profile BP000284.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000284.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR473DVS
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.09 0.14 0.05 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4314 4199 4304 5532 5103 4779 4605 4707 3725 4951 4841 3678 3887 3462 5596 6788 2028 8099 1797 960 1751 1576 249 6876 156 114 867 7396 494 2170 107 1118 3423 4479 7821 5234 6113 4844 4336 4166 5214 4806 5913 8786 6345 3716 4477 4295 5483 5528 ]
C [ 4898 5024 5404 4167 4036 4751 5194 4997 5124 2683 2563 4373 5081 8170 4116 5063 5387 1901 5811 9107 751 16083 18321 10622 10949 18592 1383 1294 6169 2618 121 1094 8359 6815 2672 4785 3744 4151 4305 4142 3185 2809 4209 4132 4487 4477 3262 6651 6799 4758 ]
G [ 4900 4840 4515 4271 4090 4290 4419 5413 3694 6308 7798 6529 5276 3277 3452 3773 4615 6416 9505 1083 13770 864 147 611 158 65 491 7394 11424 774 18441 15058 1885 3723 6035 4579 4031 4903 5448 6135 6870 8060 4520 2801 3414 3814 6096 4819 3206 4542 ]
T [ 4918 4967 4807 5060 5801 5210 4812 3913 6487 5088 3828 4450 4786 4121 5866 3406 7000 2614 1917 7880 2758 507 313 921 7767 259 16289 2946 943 13468 361 1760 5363 4013 2502 4432 5142 5132 4941 4587 3761 3355 4388 3311 4784 7023 5195 3265 3542 4202 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.03 0.03 -0.02 -0.06 -0.02 0.00 -0.04 0.02 -0.07 -0.04 -0.03 0.05 -0.05 -0.03 -0.07 -0.03 -0.02 -0.01 0.02 0.00 0.01 -0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.03 0.10 -0.02 0.10 0.15 0.08 0.11 0.15 0.02 -0.01 0.04 0.07 -0.02 -0.02 0.05 0.03 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.05 -0.02 0.10 -0.03 -0.03 -0.00 -0.06 -0.02 -0.01 0.04 0.10 -0.03 0.15 0.10 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.04 -0.05 -0.06 0.04 -0.04 0.08 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages