Detailed information of deep learning profile BP000283.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in CD4-positive and alpha-beta T cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000283.1
Cell line/tissue: CD4-positive and alpha-beta T cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR470KCE
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.07 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.15 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 3681 3612 3662 4397 4140 3957 3972 3927 3391 4165 4043 3124 3349 2919 4702 5641 1873 6803 1738 920 1528 1346 266 5335 184 122 1004 5876 565 2371 208 1145 2821 3774 5983 4314 4959 4058 3728 3643 4258 3959 4860 6893 5094 3244 3766 3633 4519 4628 ]
C [ 4495 4551 4568 4021 3913 4373 4556 4452 4498 2852 2673 4189 4485 7028 3800 4539 4849 1847 4706 8280 809 13814 15864 9466 10405 16109 1499 1526 5767 2658 266 1338 7207 5571 2680 4220 3487 3870 4038 3751 3063 2721 3919 3795 4045 4103 3207 5635 5742 4235 ]
G [ 4309 4243 4101 3954 3877 3884 3960 4700 3535 5295 6403 5484 4495 3073 3297 3413 4075 5541 8454 1064 11799 851 124 715 129 89 577 6582 9007 1128 15534 12410 1932 3668 5488 4208 3950 4438 4752 5257 5882 6867 4015 2799 3365 3491 5259 4296 3118 4066 ]
T [ 4051 4130 4205 4164 4606 4322 4048 3457 5112 4224 3417 3739 4207 3516 4737 2943 5739 2345 1638 6272 2400 525 282 1020 5818 216 13456 2552 1197 10379 528 1643 4576 3523 2385 3794 4140 4170 4018 3885 3333 2989 3742 3049 4032 5698 4304 2972 3157 3607 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.04 0.03 -0.07 -0.04 -0.03 0.05 -0.05 -0.02 -0.06 -0.02 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.03 0.11 -0.02 0.12 0.16 0.09 0.12 0.16 0.01 -0.02 0.04 0.07 -0.02 -0.02 0.05 0.03 -0.00 0.01 0.01 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.04 0.06 -0.02 0.11 -0.03 -0.05 -0.00 -0.07 -0.01 -0.00 0.05 0.10 -0.02 0.16 0.10 -0.01 0.04 0.04 0.01 0.01 ]
T [ 0.00 0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.05 -0.04 -0.06 0.05 -0.05 0.08 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.01 0.01 0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages