Detailed information of deep learning profile BP000283.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in CD4-positive and alpha-beta T cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000283.1
Cell line/tissue: CD4-positive and alpha-beta T cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR470KCE
Model: BPNet
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Contribution weight matrix (CWM)

A [ 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.15 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.07 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

A [ 3607 3157 2972 4304 5698 4032 3049 3742 2989 3333 3885 4018 4170 4140 3794 2385 3523 4576 1643 528 10379 1197 2552 13456 216 5818 1020 282 525 2400 6272 1638 2345 5739 2943 4737 3516 4207 3739 3417 4224 5112 3457 4048 4322 4606 4164 4205 4130 4051 ]
C [ 4066 3118 4296 5259 3491 3365 2799 4015 6867 5882 5257 4752 4438 3950 4208 5488 3668 1932 12410 15534 1128 9007 6582 577 89 129 715 124 851 11799 1064 8454 5541 4075 3413 3297 3073 4495 5484 6403 5295 3535 4700 3960 3884 3877 3954 4101 4243 4309 ]
G [ 4235 5742 5635 3207 4103 4045 3795 3919 2721 3063 3751 4038 3870 3487 4220 2680 5571 7207 1338 266 2658 5767 1526 1499 16109 10405 9466 15864 13814 809 8280 4706 1847 4849 4539 3800 7028 4485 4189 2673 2852 4498 4452 4556 4373 3913 4021 4568 4551 4495 ]
T [ 4628 4519 3633 3766 3244 5094 6893 4860 3959 4258 3643 3728 4058 4959 4314 5983 3774 2821 1145 208 2371 565 5876 1004 122 184 5335 266 1346 1528 920 1738 6803 1873 5641 4702 2919 3349 3124 4043 4165 3391 3927 3972 3957 4140 4397 3662 3612 3681 ]

Hypothetical CWM

A [ 0.01 0.01 -0.01 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.08 -0.05 0.05 -0.06 -0.04 -0.05 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 0.00 0.00 ]
C [ 0.01 0.01 0.04 0.04 -0.01 0.10 0.16 -0.02 0.10 0.05 -0.00 -0.01 -0.07 -0.00 -0.05 -0.03 0.11 -0.02 0.06 0.04 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.02 0.07 0.04 -0.02 0.01 0.16 0.12 0.09 0.16 0.12 -0.02 0.11 0.03 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.02 -0.06 -0.02 -0.05 0.05 -0.03 -0.04 -0.07 0.03 -0.04 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages