Detailed information of deep learning profile BP000282.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in tibial nerve using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000282.1
Cell line/tissue: tibial nerve
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR469POZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.13 0.04 0.05 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.06 -0.00 0.16 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4832 4774 4942 6018 5705 5387 5234 5347 4283 5623 5377 4291 4448 4026 6289 7322 2474 8507 2287 1327 2078 1794 454 7217 244 156 1075 8215 580 2510 145 1244 3843 4976 8511 5875 6833 5506 4966 4810 5807 5339 6612 9882 7039 4221 5000 4717 6235 6305 ]
C [ 5502 5581 5846 4729 4665 5217 5689 5589 5718 3337 3137 4850 5644 8745 4647 5677 6000 2616 6582 9713 1224 17241 19788 11617 12410 20640 1858 1516 6848 3295 153 1222 9114 7300 2931 5159 4089 4511 4785 4619 3445 3006 4590 4339 4997 4924 3564 7437 7479 5188 ]
G [ 5349 5275 4990 4798 4601 4803 4860 5834 4122 6706 8196 6969 5845 3767 3930 4268 5001 6940 9954 1656 14581 1407 497 1146 305 123 711 8145 12691 883 20470 16863 2231 4382 6880 5263 4534 5525 5924 6564 7619 9147 5041 3203 3911 4186 6794 5364 3470 5067 ]
T [ 5551 5604 5456 5689 6263 5827 5451 4464 7111 5568 4524 5124 5297 4696 6368 3967 7759 3171 2411 8538 3351 792 495 1254 8275 315 17590 3358 1115 14546 466 1905 6046 4576 2912 4937 5778 5692 5559 5241 4363 3742 4991 3810 5287 7903 5876 3716 4050 4674 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.03 0.02 -0.06 -0.03 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.01 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.00 0.04 0.10 -0.01 0.10 0.14 0.09 0.11 0.15 0.03 -0.00 0.06 0.08 -0.01 -0.02 0.05 0.03 -0.00 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.03 0.05 -0.01 0.11 -0.01 -0.03 0.02 -0.04 0.00 0.02 0.05 0.11 -0.02 0.16 0.11 -0.01 0.03 0.04 0.02 0.00 0.01 0.02 ]
T [ 0.00 0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.01 -0.04 -0.04 -0.05 0.04 -0.04 0.07 -0.01 -0.02 0.04 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.00 0.01 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages