Detailed information of deep learning profile BP000282.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in tibial nerve using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000282.1
Cell line/tissue: tibial nerve
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR469POZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.16 -0.00 0.06 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.08 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.05 0.04 0.13 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4674 4050 3716 5876 7903 5287 3810 4991 3742 4363 5241 5559 5692 5778 4937 2912 4576 6046 1905 466 14546 1115 3358 17590 315 8275 1254 495 792 3351 8538 2411 3171 7759 3967 6368 4696 5297 5124 4524 5568 7111 4464 5451 5827 6263 5689 5456 5604 5551 ]
C [ 5067 3470 5364 6794 4186 3911 3203 5041 9147 7619 6564 5924 5525 4534 5263 6880 4382 2231 16863 20470 883 12691 8145 711 123 305 1146 497 1407 14581 1656 9954 6940 5001 4268 3930 3767 5845 6969 8196 6706 4122 5834 4860 4803 4601 4798 4990 5275 5349 ]
G [ 5188 7479 7437 3564 4924 4997 4339 4590 3006 3445 4619 4785 4511 4089 5159 2931 7300 9114 1222 153 3295 6848 1516 1858 20640 12410 11617 19788 17241 1224 9713 6582 2616 6000 5677 4647 8745 5644 4850 3137 3337 5718 5589 5689 5217 4665 4729 5846 5581 5502 ]
T [ 6305 6235 4717 5000 4221 7039 9882 6612 5339 5807 4810 4966 5506 6833 5875 8511 4976 3843 1244 145 2510 580 8215 1075 156 244 7217 454 1794 2078 1327 2287 8507 2474 7322 6289 4026 4448 4291 5377 5623 4283 5347 5234 5387 5705 6018 4942 4774 4832 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.02 -0.01 0.07 -0.04 0.04 -0.05 -0.04 -0.04 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 0.00 0.00 ]
C [ 0.02 0.01 0.00 0.02 0.04 0.03 -0.01 0.11 0.16 -0.02 0.11 0.05 0.02 0.00 -0.04 0.02 -0.03 -0.01 0.11 -0.01 0.05 0.03 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.00 0.01 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.01 0.08 0.06 -0.00 0.03 0.15 0.11 0.09 0.14 0.10 -0.01 0.10 0.04 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.01 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.03 -0.03 -0.06 0.02 -0.03 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages