Detailed information of deep learning profile BP000281.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in brain using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000281.1
Cell line/tissue: brain
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR467EQP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.14 0.05 0.06 0.15 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.15 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4267 4139 4105 4862 4659 4428 4366 4492 3906 4697 4587 3701 3860 3296 5421 6427 2238 7600 2154 1117 1699 1512 263 5900 196 148 1197 6738 676 2848 239 1400 3379 4381 6720 4948 5401 4684 4377 4297 4799 4576 5392 7610 5834 3882 4263 4220 5047 5336 ]
C [ 4613 4693 4857 4206 4080 4701 4883 4910 4681 3041 2820 4570 4769 7514 3935 4692 5231 1944 5206 8554 866 15142 17341 10401 10841 17569 1635 1461 6502 2530 246 1349 7606 5742 2821 4440 3770 4072 4279 3940 3264 2919 4180 3961 4213 4112 3394 5743 5941 4450 ]
G [ 4495 4464 4415 4177 4182 4109 4165 4776 3807 5497 6663 5634 4773 3281 3383 3626 4250 5779 8850 1158 12366 929 95 569 160 55 485 6907 9493 1024 16919 13367 2114 3855 5781 4556 4251 4678 4977 5402 6065 7023 4450 2992 3545 3807 5436 4571 3369 4230 ]
T [ 4682 4761 4680 4812 5136 4819 4643 3879 5663 4822 3987 4152 4655 3966 5318 3312 6338 2734 1847 7228 3126 474 358 1187 6860 285 14740 2951 1386 11655 653 1941 4958 4079 2735 4113 4635 4623 4424 4418 3929 3539 4035 3494 4465 6256 4964 3523 3700 4041 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.04 0.03 -0.07 -0.03 -0.03 0.05 -0.04 -0.02 -0.06 -0.03 -0.01 -0.00 0.02 0.01 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.00 0.04 0.11 -0.01 0.11 0.15 0.09 0.11 0.15 0.02 -0.01 0.05 0.07 -0.03 -0.02 0.05 0.03 0.00 0.02 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.11 -0.02 -0.04 0.00 -0.06 -0.02 0.01 0.05 0.10 -0.01 0.15 0.10 -0.01 0.03 0.04 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.03 -0.02 -0.01 0.02 -0.01 -0.05 -0.03 -0.05 0.05 -0.04 0.08 -0.01 -0.02 0.03 -0.02 -0.00 0.02 -0.01 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 23

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages