Detailed information of deep learning profile BP000281.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in brain using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000281.1
Cell line/tissue: brain
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR467EQP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.15 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.15 0.06 0.05 0.14 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4041 3700 3523 4964 6256 4465 3494 4035 3539 3929 4418 4424 4623 4635 4113 2735 4079 4958 1941 653 11655 1386 2951 14740 285 6860 1187 358 474 3126 7228 1847 2734 6338 3312 5318 3966 4655 4152 3987 4822 5663 3879 4643 4819 5136 4812 4680 4761 4682 ]
C [ 4230 3369 4571 5436 3807 3545 2992 4450 7023 6065 5402 4977 4678 4251 4556 5781 3855 2114 13367 16919 1024 9493 6907 485 55 160 569 95 929 12366 1158 8850 5779 4250 3626 3383 3281 4773 5634 6663 5497 3807 4776 4165 4109 4182 4177 4415 4464 4495 ]
G [ 4450 5941 5743 3394 4112 4213 3961 4180 2919 3264 3940 4279 4072 3770 4440 2821 5742 7606 1349 246 2530 6502 1461 1635 17569 10841 10401 17341 15142 866 8554 5206 1944 5231 4692 3935 7514 4769 4570 2820 3041 4681 4910 4883 4701 4080 4206 4857 4693 4613 ]
T [ 5336 5047 4220 4263 3882 5834 7610 5392 4576 4799 4297 4377 4684 5401 4948 6720 4381 3379 1400 239 2848 676 6738 1197 148 196 5900 263 1512 1699 1117 2154 7600 2238 6427 5421 3296 3860 3701 4587 4697 3906 4492 4366 4428 4659 4862 4105 4139 4267 ]

Hypothetical CWM

   
A [ 0.00 -0.01 -0.01 0.02 -0.00 -0.02 0.03 -0.02 -0.01 0.08 -0.04 0.05 -0.05 -0.03 -0.05 -0.01 0.02 -0.01 -0.02 0.03 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.04 0.03 -0.01 0.10 0.15 -0.01 0.10 0.05 0.01 -0.02 -0.06 0.00 -0.04 -0.02 0.11 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.02 0.00 0.03 0.05 -0.02 -0.03 0.07 0.05 -0.01 0.02 0.15 0.11 0.09 0.15 0.11 -0.01 0.11 0.04 -0.00 0.03 0.02 0.00 0.04 0.02 ]
T [ 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.04 0.05 -0.03 -0.03 -0.07 0.03 -0.04 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 23

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages