Detailed information of deep learning profile BP000280.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000280.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR466TNQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.07 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3747 3216 2992 4731 6385 4322 3139 4016 3032 3514 4285 4402 4783 4685 4119 2334 3646 4968 1619 365 12178 935 2723 14938 180 6909 882 267 410 2488 7125 1711 2430 6429 3107 5393 3846 4360 4132 3570 4637 5867 3576 4427 4696 5238 4633 4444 4512 4469 ]
C [ 4160 2986 4508 5654 3569 3158 2638 4198 7406 6281 5621 5093 4543 3793 4231 5544 3589 1773 13773 16874 794 10315 6846 479 81 135 671 143 701 12856 853 8835 5846 4224 3479 3161 3022 4869 5898 7102 5862 3503 4989 4042 4009 3867 3935 4100 4465 4479 ]
G [ 4493 6409 6099 3134 4221 4171 3896 3977 2687 3007 3813 4039 3813 3488 4446 2567 6163 7654 1069 145 2518 5800 1262 1284 17158 10322 9806 16882 14985 613 8686 5392 1809 5092 4824 3849 7534 4721 4158 2447 2583 4737 4599 4775 4475 3777 3957 5027 4735 4657 ]
T [ 5117 4906 3918 3998 3342 5866 7844 5326 4392 4715 3798 3983 4378 5551 4721 7072 4119 3122 1056 133 2027 467 6686 816 98 151 6158 225 1421 1560 853 1579 7432 1772 6107 5114 3115 3567 3329 4398 4435 3410 4353 4273 4337 4635 4992 3946 3805 3912 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.01 0.02 -0.00 -0.02 0.04 -0.02 -0.01 0.09 -0.04 0.05 -0.06 -0.04 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.02 0.10 0.16 -0.04 0.10 0.05 -0.00 -0.02 -0.07 0.00 -0.03 -0.03 0.12 -0.03 0.06 0.03 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 -0.01 0.04 0.05 -0.02 -0.02 0.08 0.05 -0.01 0.02 0.16 0.12 0.09 0.15 0.12 -0.02 0.12 0.04 -0.00 0.03 0.02 -0.00 0.03 0.01 ]
T [ 0.00 0.01 0.02 0.01 0.02 -0.00 -0.01 -0.03 -0.08 -0.03 -0.05 0.06 -0.04 -0.04 -0.07 0.02 -0.04 0.01 -0.03 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 460

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 29

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages