Detailed information of deep learning profile BP000279.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Loucy using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000279.1
Cell line/tissue: Loucy
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR464DKE
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.15 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.16 0.08 0.05 0.15 0.10 0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4943 4597 4336 5521 6765 5464 4167 5091 4136 4523 5115 5180 5179 5240 4974 3533 4748 5851 2603 1361 11951 2201 3637 15455 424 6409 2113 499 1069 3929 7335 2621 3668 6838 3889 5715 4531 5156 4968 4881 5404 5932 4832 5392 5467 5573 5470 5419 5305 5330 ]
C [ 4732 4016 5155 6024 4718 4354 3879 4961 7763 6905 6009 5705 5484 5049 5481 6637 4829 2832 14653 18304 1935 10179 7336 550 108 194 694 282 1821 13042 2344 9760 6493 4823 4506 4212 4252 5402 6019 6836 5826 4702 5295 4948 4967 5024 5019 5147 5037 4994 ]
G [ 5330 6498 6576 4143 4711 4799 4813 4698 3663 3965 4619 4839 4914 4439 5057 3625 6323 8177 1906 646 2539 7303 2104 2790 19988 13775 11817 19448 15918 1489 9310 5317 2530 5903 5170 4620 7770 5464 5448 4058 4211 5328 5523 5369 5387 5009 4916 5335 5555 5378 ]
T [ 5827 5721 4765 5144 4638 6215 7973 6082 5270 5439 5089 5108 5255 6104 5320 7037 4932 3972 1670 521 4407 1149 7755 2037 312 454 6208 603 2024 2372 1843 3134 8141 3268 7267 6285 4279 4810 4397 5057 5391 4870 5182 5123 5011 5226 5427 4931 4935 5130 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.01 -0.00 0.08 -0.04 0.04 -0.05 -0.05 -0.05 -0.01 0.02 -0.02 -0.01 0.03 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.10 0.16 -0.02 0.10 0.04 -0.01 -0.04 -0.07 -0.02 -0.04 -0.03 0.11 -0.01 0.06 0.04 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.03 0.05 -0.02 -0.03 0.05 0.04 -0.01 0.03 0.17 0.12 0.10 0.15 0.12 -0.01 0.11 0.03 -0.01 0.02 0.01 -0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.01 -0.04 0.06 -0.02 -0.03 -0.06 0.02 -0.03 0.01 -0.02 -0.04 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages