Detailed information of deep learning profile BP000278.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in upper lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000278.1
Cell line/tissue: upper lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR463XCZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.16 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4539 4423 4583 5329 5121 4850 4706 4887 4090 4956 5004 3922 4153 3647 5744 6792 2403 8029 2277 1250 1965 1711 422 6358 248 170 1129 7566 593 2842 171 1279 3593 4661 7274 5271 6008 5093 4667 4530 5246 4917 6003 8521 6304 3976 4551 4387 5566 5705 ]
C [ 5164 5230 5306 4645 4424 5011 5265 5147 5218 3425 3176 4834 5208 7955 4362 5108 5574 2398 5716 9091 1145 15711 18295 10843 11844 18994 1886 1519 6659 3066 214 1237 8356 6380 3001 4760 3924 4352 4587 4295 3441 3040 4351 4159 4642 4563 3498 6497 6702 4835 ]
G [ 4830 4899 4653 4492 4462 4476 4621 5288 4078 6008 7170 6258 5259 3605 3696 4041 4771 6212 9354 1558 13177 1367 363 957 235 117 552 7292 11014 933 18584 15149 2144 4221 6458 5135 4564 5060 5486 6027 6854 7979 4750 3210 3754 4000 6109 4976 3420 4592 ]
T [ 5008 4989 4999 5075 5534 5204 4949 4219 6155 5152 4191 4527 4921 4334 5739 3600 6793 2902 2194 7642 3254 752 461 1383 7214 260 15974 3164 1275 12700 572 1876 5448 4279 2808 4375 5045 5036 4801 4689 4000 3605 4437 3651 4841 7002 5383 3681 3853 4409 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.04 0.02 -0.07 -0.04 -0.04 0.05 -0.06 -0.03 -0.07 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.04 0.11 -0.02 0.11 0.15 0.09 0.12 0.16 0.02 -0.02 0.04 0.07 -0.02 -0.02 0.05 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.04 0.05 -0.01 0.11 -0.02 -0.03 0.00 -0.06 -0.02 -0.01 0.05 0.11 -0.03 0.17 0.11 -0.01 0.04 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.04 -0.05 0.08 -0.02 -0.02 0.04 -0.04 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 392

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 75

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages