Detailed information of deep learning profile BP000277.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in astrocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000277.1
Cell line/tissue: astrocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR461VHZ
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.15 -0.00 0.06 0.02 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.08 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.15 0.07 0.05 0.14 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 1016 860 799 1334 1921 1274 796 1054 816 911 1186 1197 1218 1327 1095 643 1030 1411 432 100 3403 269 700 4143 64 1595 318 133 261 722 1828 579 734 1637 909 1493 1013 1221 1128 1062 1268 1563 1015 1191 1356 1377 1250 1252 1191 1221 ]
C [ 1179 792 1218 1643 970 832 699 1198 2238 1880 1604 1435 1357 1121 1223 1682 1050 484 3928 4682 211 2889 1974 140 28 50 209 99 286 3383 404 2318 1682 1143 996 900 867 1367 1595 1864 1532 975 1430 1174 1137 1195 1182 1144 1241 1251 ]
G [ 1272 1776 1869 790 1121 1211 1012 1107 691 831 1059 1155 1083 971 1288 673 1687 2140 253 40 683 1587 346 381 4758 3151 2867 4490 3903 287 2283 1400 583 1437 1356 1095 2079 1319 1207 780 893 1372 1256 1313 1188 1042 1102 1391 1350 1327 ]
T [ 1412 1451 993 1112 867 1562 2372 1520 1134 1257 1030 1092 1221 1460 1273 1881 1112 844 266 57 582 134 1859 215 29 83 1485 157 429 487 364 582 1880 662 1618 1391 920 972 949 1173 1186 969 1178 1201 1198 1265 1345 1092 1097 1080 ]

Hypothetical CWM

   
A [ 0.02 0.01 -0.01 0.01 -0.01 -0.00 0.00 0.01 0.00 0.01 0.00 -0.02 -0.02 0.03 -0.01 -0.03 0.04 -0.01 -0.02 0.09 -0.05 0.03 -0.06 -0.06 -0.04 -0.01 0.01 -0.02 -0.01 0.02 -0.01 0.01 ]
C [ -0.01 -0.01 -0.03 -0.00 0.05 0.03 0.02 0.02 0.01 0.01 0.02 0.06 0.04 -0.02 0.12 0.16 -0.03 0.10 0.05 -0.00 -0.02 -0.06 -0.00 -0.03 -0.03 0.10 -0.02 0.04 0.02 0.01 0.01 0.01 ]
G [ 0.00 0.01 -0.00 -0.00 -0.02 -0.00 0.01 0.01 0.01 0.01 0.02 -0.01 0.04 0.05 -0.03 -0.02 0.08 0.05 -0.02 0.01 0.16 0.12 0.09 0.15 0.11 -0.02 0.10 0.03 -0.00 0.02 0.01 -0.00 ]
T [ -0.01 0.01 0.04 0.01 0.00 0.00 -0.00 0.00 0.01 0.01 0.01 0.02 -0.01 -0.01 -0.04 -0.07 -0.04 -0.06 0.05 -0.05 -0.04 -0.07 0.02 -0.04 0.00 -0.03 -0.05 -0.01 0.02 -0.03 0.02 0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages