Detailed information of deep learning profile BP000276.1

  1. Home
  2. Deep Learning Profile > BP000276.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000276.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR461HOC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.15 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.04 0.15 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3516 4815 6053 4378 3594 4021 3514 3879 4339 4514 4529 4669 4096 2824 4133 4872 2010 939 11107 1439 3010 14247 380 6845 1480 417 498 2900 7259 1776 2628 6322 3150 5230 3925 4504 4091 3886 4540 5610 3821 4635 4716 5094 4822 4579 4651 4581 4664 4427 ]
C [ 4794 5540 4031 3898 3434 4676 7062 6254 5611 5094 4893 4479 4857 6086 3981 2427 13336 16908 1236 9379 6987 716 127 238 1014 122 782 13209 1084 9232 5982 4570 3994 3722 3466 4939 6017 6837 5815 4028 5092 4424 4321 4293 4415 4576 4723 4681 4628 4730 ]
G [ 5917 3823 4547 4634 4355 4551 3363 3654 4296 4548 4432 4002 4707 3091 5961 7817 1688 345 3241 6867 1957 2077 17743 11118 9890 17597 15595 727 9051 5536 2121 5470 4928 4114 7818 5161 4718 3184 3348 4991 5119 5177 5005 4406 4389 5155 5072 4966 4818 5062 ]
T [ 4218 4267 3814 5535 7062 5197 4506 4658 4199 4289 4591 5295 4785 6444 4370 3329 1411 253 2861 760 6491 1405 195 244 6061 309 1570 1609 1051 1901 7714 2083 6373 5379 3236 3841 3619 4538 4742 3816 4413 4209 4403 4652 4819 4135 3999 4217 4335 4226 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.01 0.08 -0.04 0.04 -0.05 -0.04 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.10 0.15 -0.02 0.10 0.05 -0.00 -0.01 -0.05 0.01 -0.04 -0.03 0.11 -0.02 0.06 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.04 0.05 -0.02 -0.03 0.07 0.05 -0.01 0.03 0.15 0.11 0.09 0.15 0.11 -0.02 0.12 0.05 -0.00 0.02 0.02 0.00 0.04 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.01 -0.03 -0.06 -0.02 -0.04 0.05 -0.03 -0.03 -0.07 0.02 -0.04 0.00 -0.02 -0.06 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 877

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 239

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 117

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages