Detailed information of deep learning profile BP000275.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in C4-2B using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000275.1
Cell line/tissue: C4-2B
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR460LGH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.02 -0.00 -0.01 0.07 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.20 0.09 0.06 0.18 0.12 0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5148 4801 4563 5950 6985 5504 4412 5075 4434 4770 5364 5463 5472 5407 4871 3434 4969 6092 2411 779 12615 2027 3485 16016 326 6879 1858 458 1004 3929 7933 2630 3757 7101 4160 5963 4954 5740 5089 5108 5597 6486 5029 5633 5966 5801 5666 5837 5588 5624 ]
C [ 4424 3681 4935 5511 4173 3969 3653 4731 7318 6399 5737 5328 5134 4624 5335 6395 4583 2476 14739 19118 1405 10290 6684 543 91 167 677 194 1595 13183 1862 9404 5800 4670 3855 3997 4051 5006 5721 6420 5528 4265 4858 4617 4490 4523 4514 4647 4828 4698 ]
G [ 4806 6105 6078 3816 4491 4400 4218 4291 3278 3639 4291 4439 4261 3896 4539 3110 5844 7816 1679 303 2538 7245 1876 2271 19859 13198 10904 19407 15824 1198 9049 5354 2342 5471 4913 4196 7065 4882 5130 3611 3924 4909 5179 4969 4842 4715 4688 5070 5097 4848 ]
T [ 6187 5978 4989 5288 4916 6692 8282 6468 5535 5757 5173 5335 5698 6638 5820 7626 5169 4181 1736 365 4007 1003 8520 1735 289 321 7126 506 2142 2255 1721 3177 8666 3323 7637 6409 4495 4937 4625 5426 5516 4905 5499 5346 5267 5526 5697 5011 5052 5395 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.05 0.05 -0.06 -0.05 -0.05 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.02 0.01 0.02 0.06 0.05 -0.01 0.13 0.20 -0.00 0.13 0.06 0.00 -0.02 -0.06 0.01 -0.03 -0.02 0.14 -0.00 0.08 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 0.00 0.04 0.06 -0.02 -0.02 0.08 0.06 -0.01 0.03 0.20 0.15 0.12 0.19 0.14 -0.01 0.14 0.05 -0.00 0.03 0.03 0.01 0.04 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.04 -0.07 -0.02 -0.05 0.06 -0.03 -0.04 -0.07 0.03 -0.04 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 363

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 356

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 223

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 146

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages