Detailed information of deep learning profile BP000274.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in type B pancreatic cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000274.1
Cell line/tissue: type B pancreatic cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR458PYQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.11 0.19 -0.00 0.07 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.05 0.00 0.02 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.09 0.06 0.13 0.08 0.00 0.03 0.01 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 4508 4017 3673 5372 7010 5000 3625 4666 3418 4258 4815 5023 4824 4945 4073 2905 4187 5726 1589 513 12380 1283 2946 15624 201 4937 2273 976 2117 4576 6049 3541 4076 5828 4337 5301 4509 5143 4721 4795 5098 5545 4709 4996 5041 5063 5194 5054 5013 4932 ]
C [ 4561 3345 5028 6200 4149 4055 3351 4798 8688 7073 6119 5308 5135 4557 5614 6989 4756 2344 16038 18716 924 10909 7784 390 86 214 1080 936 2610 9897 3165 7335 5295 4387 4038 3985 4185 4765 5410 5781 5127 4346 4825 4673 4664 4683 4692 4844 4947 4864 ]
G [ 4597 6503 6576 3429 4364 4516 4048 4309 2797 3227 4080 4521 4180 3840 4696 2613 6132 7833 1028 138 2400 6736 1305 2198 19074 13890 11498 16202 12512 2260 7678 5115 3531 5572 5194 4803 6571 5189 5112 4128 4410 5009 5107 5114 5039 4779 4689 5002 5012 4871 ]
T [ 5857 5658 4246 4522 4000 5952 8499 5750 4620 4965 4509 4671 5384 6181 5140 7016 4448 3620 868 156 3819 595 7488 1311 162 482 4672 1409 2284 2790 2631 3532 6621 3736 5954 5434 4258 4426 4280 4819 4888 4623 4882 4740 4779 4998 4948 4623 4551 4856 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.09 -0.06 0.03 -0.06 -0.05 -0.04 -0.01 0.01 -0.01 -0.01 0.02 -0.01 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.02 0.13 0.19 -0.02 0.12 0.06 -0.01 -0.02 -0.07 -0.00 -0.03 -0.01 0.09 0.01 0.05 0.03 0.02 0.01 ]
G [ 0.01 0.01 0.01 0.02 0.00 0.04 0.06 -0.03 -0.03 0.07 0.05 -0.02 0.03 0.17 0.13 0.10 0.14 0.10 -0.00 0.08 0.03 0.01 0.02 0.02 ]
T [ 0.00 0.01 0.01 0.01 0.02 -0.01 -0.02 -0.05 -0.09 -0.03 -0.07 0.06 -0.05 -0.04 -0.06 0.00 -0.04 -0.00 -0.02 -0.04 -0.01 0.01 -0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1157

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 336

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 258

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 222

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages