Detailed information of deep learning profile BP000273.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000273.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR452KYY
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.16 -0.00 0.07 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4541 3935 3594 5728 7661 5228 3650 4751 3578 4112 5098 5427 5563 5612 4873 2701 4221 5920 1942 358 14941 1021 3215 17665 225 8537 817 320 609 2817 8894 2019 2795 7949 3667 6474 4512 5050 4890 4262 5409 7143 4197 5219 5746 6436 5694 5229 5510 5338 ]
C [ 4766 3192 5090 6575 3952 3517 2815 4732 8744 7276 6484 5855 5158 4161 4699 6193 3912 1910 16181 19802 726 12467 7767 460 61 105 531 117 715 15162 923 10194 6947 4867 3949 3674 3349 5787 7016 8464 6909 3684 5789 4738 4573 4150 4430 4790 5017 5185 ]
G [ 5031 7221 7262 3222 4793 4710 4246 4407 2811 3269 4233 4485 4361 3942 5118 2662 7482 8965 1050 128 2664 6413 1264 1420 20028 11663 11389 19730 17397 662 9694 6381 2006 5614 5440 4126 8770 5302 4440 2479 2617 5511 5237 5379 4804 4163 4354 5696 5293 5227 ]
T [ 6095 6085 4487 4908 4027 6978 9722 6543 5300 5776 4618 4666 5351 6718 5743 8877 4818 3638 1260 145 2102 532 8187 888 119 128 7696 266 1712 1792 922 1839 8685 2003 7377 6159 3802 4294 4087 5228 5498 4095 5210 5097 5310 5684 5955 4718 4613 4683 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.01 -0.02 0.04 -0.03 -0.02 0.09 -0.04 0.05 -0.07 -0.05 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.06 0.04 -0.01 0.11 0.17 -0.03 0.11 0.05 0.00 -0.01 -0.05 0.01 -0.03 -0.03 0.12 -0.02 0.06 0.03 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 -0.00 0.04 0.05 -0.02 -0.02 0.08 0.05 -0.01 0.03 0.16 0.12 0.10 0.15 0.12 -0.02 0.12 0.05 0.00 0.03 0.02 -0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.08 -0.03 -0.05 0.06 -0.04 -0.04 -0.07 0.02 -0.04 0.00 -0.02 -0.06 -0.01 0.03 -0.03 0.02 0.01 -0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages