Detailed information of deep learning profile BP000272.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus squamous epithelium using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000272.1
Cell line/tissue: esophagus squamous epithelium
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR450FRI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.13 0.04 0.06 0.15 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3786 3659 3673 4084 4102 3786 3842 3901 3530 4033 4013 3448 3443 3149 4557 5138 2449 6087 2192 1427 1861 1413 213 5125 317 164 1250 5719 549 3106 128 1019 3073 3945 5505 4308 4741 4120 3842 3686 4193 3908 4642 6326 4776 3324 3670 3582 4540 4600 ]
C [ 4167 4324 4274 3976 3951 4301 4359 4366 4274 3330 3177 4153 4362 6207 3777 4305 4752 2407 4607 7361 1282 12165 15530 8428 10431 15622 1900 1494 6053 2064 158 1120 6657 4818 2574 3843 3312 3750 3871 3666 3079 2729 3657 3650 3875 3811 3136 5454 5304 3998 ]
G [ 4085 4079 3884 3911 3791 3800 3872 4169 3540 4611 5352 4718 4221 3209 3390 3497 3689 4739 7069 1705 9609 1556 95 806 214 91 431 6163 8255 935 15514 12351 2021 3666 5518 4296 3978 4307 4417 4845 5462 6436 4000 2931 3343 3555 4958 4019 2958 3866 ]
T [ 4049 4025 4256 4116 4243 4200 4014 3651 4743 4113 3545 3768 4061 3522 4363 3147 5197 2854 2219 5594 3335 953 249 1728 5125 210 12506 2711 1230 9982 287 1597 4336 3658 2490 3640 4056 3910 3957 3890 3353 3014 3788 3180 4093 5397 4323 3032 3285 3623 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 0.00 -0.03 0.02 -0.06 -0.04 -0.04 0.05 -0.06 -0.02 -0.07 -0.04 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 0.00 0.01 0.02 -0.01 0.03 0.09 -0.02 0.09 0.13 0.08 0.11 0.15 0.01 -0.03 0.04 0.06 -0.04 -0.03 0.04 0.02 -0.01 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.02 0.04 -0.02 0.09 -0.03 -0.04 -0.01 -0.07 -0.03 -0.02 0.04 0.10 -0.04 0.15 0.10 -0.02 0.03 0.04 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.01 -0.04 -0.04 -0.05 0.03 -0.05 0.08 -0.02 -0.03 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3264

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 965

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 843

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 298

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 259

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages