Detailed information of deep learning profile BP000270.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in adrenal gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000270.1
Cell line/tissue: adrenal gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR450BLH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.05 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.15 0.06 0.04 0.13 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3632 3297 3155 4424 5539 4049 3127 3680 3083 3454 3854 3984 4168 4235 3684 2443 3726 4346 1719 585 10412 1147 2654 12797 236 6200 1265 289 423 2612 6570 1724 2375 5692 2916 4632 3604 4069 3696 3487 4257 5028 3399 4154 4284 4590 4344 4172 4185 4226 ]
C [ 3639 2748 3946 4759 3246 3014 2639 3867 6223 5364 4602 4310 3999 3711 3984 5032 3202 1829 11904 14922 842 8255 6111 381 62 174 666 81 531 11095 993 7540 4996 3538 3184 3035 2885 4084 4966 5615 4732 3270 4229 3600 3510 3474 3567 3710 3879 3788 ]
G [ 3802 5216 5032 2930 3644 3675 3396 3524 2523 2795 3544 3689 3473 3163 3827 2462 4992 6612 1073 152 2125 5861 1232 1537 15395 9254 8408 15239 13595 617 7189 4827 1709 4667 4093 3433 6366 4188 3947 2543 2670 4103 4140 4218 4060 3581 3549 4215 4134 4059 ]
T [ 4753 4565 3693 3713 3397 5088 6664 4755 3997 4213 3826 3843 4186 4717 4331 5889 3906 3039 1130 167 2447 563 5829 1111 133 198 5487 217 1277 1502 1074 1735 6746 1929 5633 4726 2971 3485 3217 4181 4167 3425 4058 3854 3972 4181 4366 3729 3628 3753 ]

Hypothetical CWM

   
A [ 0.01 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.07 -0.04 0.04 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.01 0.03 -0.01 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.04 0.03 -0.01 0.10 0.16 -0.01 0.10 0.05 0.01 -0.02 -0.06 0.01 -0.02 -0.02 0.11 -0.01 0.05 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.05 -0.01 -0.02 0.07 0.05 -0.01 0.02 0.15 0.11 0.08 0.14 0.11 -0.02 0.10 0.04 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.01 0.01 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.05 -0.03 -0.03 -0.07 0.02 -0.03 0.00 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3728

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages