Detailed information of deep learning profile BP000270.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in adrenal gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000270.1
Cell line/tissue: adrenal gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR450BLH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.13 0.04 0.06 0.15 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.05 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3753 3628 3729 4366 4181 3972 3854 4058 3425 4167 4181 3217 3485 2971 4726 5633 1929 6746 1735 1074 1502 1277 217 5487 198 133 1111 5829 563 2447 167 1130 3039 3906 5889 4331 4717 4186 3843 3826 4213 3997 4755 6664 5088 3397 3713 3693 4565 4753 ]
C [ 4059 4134 4215 3549 3581 4060 4218 4140 4103 2670 2543 3947 4188 6366 3433 4093 4667 1709 4827 7189 617 13595 15239 8408 9254 15395 1537 1232 5861 2125 152 1073 6612 4992 2462 3827 3163 3473 3689 3544 2795 2523 3524 3396 3675 3644 2930 5032 5216 3802 ]
G [ 3788 3879 3710 3567 3474 3510 3600 4229 3270 4732 5615 4966 4084 2885 3035 3184 3538 4996 7540 993 11095 531 81 666 174 62 381 6111 8255 842 14922 11904 1829 3202 5032 3984 3711 3999 4310 4602 5364 6223 3867 2639 3014 3246 4759 3946 2748 3639 ]
T [ 4226 4185 4172 4344 4590 4284 4154 3399 5028 4257 3487 3696 4069 3604 4632 2916 5692 2375 1724 6570 2612 423 289 1265 6200 236 12797 2654 1147 10412 585 1719 4346 3726 2443 3684 4235 4168 3984 3854 3454 3083 3680 3127 4049 5539 4424 3155 3297 3632 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.00 -0.03 0.02 -0.07 -0.03 -0.03 0.05 -0.05 -0.02 -0.06 -0.03 -0.01 -0.00 0.01 0.01 0.01 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.00 0.04 0.10 -0.02 0.11 0.14 0.08 0.11 0.15 0.02 -0.01 0.05 0.07 -0.02 -0.01 0.05 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.05 -0.01 0.11 -0.02 -0.02 0.01 -0.06 -0.02 0.01 0.05 0.10 -0.01 0.16 0.10 -0.01 0.03 0.04 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.01 0.03 -0.01 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.04 -0.04 0.07 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3728

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages