Detailed information of deep learning profile BP000269.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in transverse colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000269.1
Cell line/tissue: transverse colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR449SEF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.14 0.06 0.04 0.13 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4216 3623 3495 5095 6546 4578 3445 4258 3421 3879 4557 4717 4855 4842 4181 2621 3942 5166 1751 460 12586 1108 2833 15510 182 7056 1027 255 546 2927 7377 1938 2743 6595 3355 5472 4013 4680 4264 3980 4901 5981 3942 4654 4952 5322 4944 4727 4747 4681 ]
C [ 4147 3142 4556 5477 3703 3384 2814 4301 7273 6195 5547 5019 4571 3997 4553 5756 3746 1875 14149 17424 765 10322 6937 380 49 115 584 111 896 12661 1202 8913 5860 4314 3591 3283 3210 4826 5841 6848 5661 3723 4823 4155 3988 4024 4069 4192 4549 4477 ]
G [ 4452 6215 5943 3253 4220 4170 3847 4008 2814 3113 3899 4120 3965 3589 4428 2632 5993 7665 1074 151 2363 6225 1266 1357 17836 10832 10204 17566 15225 825 8524 5333 1927 5115 4686 3925 7487 4765 4373 2727 2903 4649 4750 4865 4612 3978 4068 4993 4758 4726 ]
T [ 5355 5190 4176 4345 3701 6038 8064 5603 4662 4983 4167 4314 4779 5742 5008 7161 4489 3464 1196 135 2456 515 7134 923 103 167 6355 238 1503 1757 1067 1986 7640 2146 6538 5490 3460 3899 3692 4615 4705 3817 4655 4496 4618 4846 5089 4258 4116 4286 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.02 0.03 -0.02 -0.02 0.08 -0.05 0.03 -0.05 -0.04 -0.04 -0.01 0.02 -0.01 -0.02 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.01 0.10 0.14 -0.03 0.09 0.04 -0.01 -0.02 -0.05 -0.00 -0.03 -0.02 0.10 -0.01 0.05 0.03 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.04 -0.03 -0.02 0.06 0.04 -0.02 0.01 0.14 0.10 0.08 0.13 0.10 -0.02 0.10 0.03 -0.01 0.02 0.01 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.01 -0.03 -0.07 -0.03 -0.05 0.05 -0.04 -0.04 -0.06 0.01 -0.03 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 191

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 150

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages