Detailed information of deep learning profile BP000269.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in transverse colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000269.1
Cell line/tissue: transverse colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR449SEF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.13 0.04 0.06 0.14 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4286 4116 4258 5089 4846 4618 4496 4655 3817 4705 4615 3692 3899 3460 5490 6538 2146 7640 1986 1067 1757 1503 238 6355 167 103 923 7134 515 2456 135 1196 3464 4489 7161 5008 5742 4779 4314 4167 4983 4662 5603 8064 6038 3701 4345 4176 5190 5355 ]
C [ 4726 4758 4993 4068 3978 4612 4865 4750 4649 2903 2727 4373 4765 7487 3925 4686 5115 1927 5333 8524 825 15225 17566 10204 10832 17836 1357 1266 6225 2363 151 1074 7665 5993 2632 4428 3589 3965 4120 3899 3113 2814 4008 3847 4170 4220 3253 5943 6215 4452 ]
G [ 4477 4549 4192 4069 4024 3988 4155 4823 3723 5661 6848 5841 4826 3210 3283 3591 4314 5860 8913 1202 12661 896 111 584 115 49 380 6937 10322 765 17424 14149 1875 3746 5756 4553 3997 4571 5019 5547 6195 7273 4301 2814 3384 3703 5477 4556 3142 4147 ]
T [ 4681 4747 4727 4944 5322 4952 4654 3942 5981 4901 3980 4264 4680 4013 5472 3355 6595 2743 1938 7377 2927 546 255 1027 7056 182 15510 2833 1108 12586 460 1751 5166 3942 2621 4181 4842 4855 4717 4557 3879 3421 4258 3445 4578 6546 5095 3495 3623 4216 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.03 0.01 -0.06 -0.04 -0.04 0.05 -0.05 -0.03 -0.07 -0.03 -0.01 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.01 0.02 -0.01 0.03 0.10 -0.02 0.10 0.13 0.08 0.10 0.14 0.01 -0.02 0.04 0.06 -0.02 -0.03 0.04 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.03 0.05 -0.01 0.10 -0.02 -0.03 -0.00 -0.05 -0.02 -0.01 0.04 0.09 -0.03 0.14 0.10 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.02 -0.01 0.02 -0.01 -0.04 -0.04 -0.05 0.03 -0.05 0.08 -0.02 -0.02 0.03 -0.02 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1383

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 191

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 150

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages