Detailed information of deep learning profile BP000268.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in coronary artery using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000268.1
Cell line/tissue: coronary artery
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR447ANW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.05 0.04 0.14 0.09 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3619 3154 2870 4641 6276 4200 2861 3801 2904 3292 4106 4401 4594 4575 3978 2199 3519 4861 1531 264 12266 759 2593 14482 174 7036 706 230 394 2338 7162 1608 2288 6397 3000 5263 3689 4164 3950 3520 4410 5833 3442 4282 4696 5248 4547 4217 4456 4332 ]
C [ 3913 2732 4202 5332 3223 2906 2386 4055 7167 6028 5446 4783 4196 3442 3910 5121 3111 1563 13296 16293 510 10205 6545 400 63 130 500 90 610 12399 704 8390 5718 4050 3281 3044 2824 4778 5831 6941 5635 3125 4718 3801 3747 3457 3670 3880 4242 4221 ]
G [ 4203 6009 5925 2739 3969 3852 3573 3569 2327 2730 3542 3744 3597 3213 4117 2236 6164 7326 891 78 2237 5345 1082 1135 16391 9399 9239 16231 14372 531 8068 5271 1652 4664 4518 3470 7183 4401 3710 2029 2283 4459 4363 4502 4042 3481 3610 4764 4349 4342 ]
T [ 4977 4817 3715 4000 3244 5754 7892 5287 4314 4662 3618 3784 4325 5482 4707 7156 3918 2962 994 77 1699 403 6492 695 84 147 6267 161 1336 1444 778 1443 7054 1601 5913 4935 3016 3369 3221 4222 4384 3295 4189 4127 4227 4526 4885 3851 3665 3817 ]

Hypothetical CWM

   
A [ -0.00 0.00 -0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.08 -0.05 0.05 -0.06 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 -0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.10 0.15 -0.03 0.10 0.05 -0.01 -0.01 -0.05 0.01 -0.04 -0.03 0.11 -0.03 0.06 0.03 0.02 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.03 0.05 -0.02 -0.02 0.07 0.04 -0.01 0.02 0.14 0.11 0.08 0.14 0.11 -0.03 0.11 0.04 -0.00 0.03 0.02 0.00 0.03 0.01 ]
T [ -0.00 -0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.03 -0.05 0.04 -0.04 -0.04 -0.08 0.02 -0.04 -0.00 -0.02 -0.06 -0.02 0.03 -0.04 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 520

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 177

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 135

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 104

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 47

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages