Detailed information of deep learning profile BP000268.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in coronary artery using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000268.1
Cell line/tissue: coronary artery
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR447ANW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.09 0.14 0.04 0.05 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3817 3665 3851 4885 4526 4227 4127 4189 3295 4384 4222 3221 3369 3016 4935 5913 1601 7054 1443 778 1444 1336 161 6267 147 84 695 6492 403 1699 77 994 2962 3918 7156 4707 5482 4325 3784 3618 4662 4314 5287 7892 5754 3244 4000 3715 4817 4977 ]
C [ 4342 4349 4764 3610 3481 4042 4502 4363 4459 2283 2029 3710 4401 7183 3470 4518 4664 1652 5271 8068 531 14372 16231 9239 9399 16391 1135 1082 5345 2237 78 891 7326 6164 2236 4117 3213 3597 3744 3542 2730 2327 3569 3573 3852 3969 2739 5925 6009 4203 ]
G [ 4221 4242 3880 3670 3457 3747 3801 4718 3125 5635 6941 5831 4778 2824 3044 3281 4050 5718 8390 704 12399 610 90 500 130 63 400 6545 10205 510 16293 13296 1563 3111 5121 3910 3442 4196 4783 5446 6028 7167 4055 2386 2906 3223 5332 4202 2732 3913 ]
T [ 4332 4456 4217 4547 5248 4696 4282 3442 5833 4410 3520 3950 4164 3689 5263 3000 6397 2288 1608 7162 2338 394 230 706 7036 174 14482 2593 759 12266 264 1531 4861 3519 2199 3978 4575 4594 4401 4106 3292 2904 3801 2861 4200 6276 4641 2870 3154 3619 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.04 0.03 -0.02 -0.06 -0.02 -0.00 -0.04 0.02 -0.08 -0.04 -0.04 0.04 -0.05 -0.03 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 -0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.03 -0.00 0.04 0.11 -0.03 0.11 0.14 0.08 0.11 0.14 0.02 -0.01 0.04 0.07 -0.02 -0.02 0.05 0.03 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.02 0.03 0.06 -0.03 0.11 -0.03 -0.04 0.01 -0.05 -0.01 -0.01 0.05 0.10 -0.03 0.15 0.10 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ -0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.06 0.05 -0.05 0.08 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 -0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 520

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 177

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 135

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 104

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 47

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages