Detailed information of deep learning profile BP000267.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000267.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR446FOM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 -0.00 0.01 0.04 0.00 0.09 0.15 0.06 0.09 0.18 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.02 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.10 -0.00 0.01 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4194 3993 4126 4414 4321 4061 4203 4210 3969 4263 4150 3662 3751 3484 4842 5520 2955 6178 2778 1778 2190 1716 617 4640 381 185 1257 6619 611 3444 255 1031 3191 4006 6126 4452 5251 4538 4027 3957 4415 3962 5047 7087 5085 3594 4086 3770 4966 4732 ]
C [ 4328 4568 4425 4088 4174 4523 4427 4445 4325 3649 3545 4564 4539 6146 4025 4366 4833 2553 4500 7215 1587 12055 15462 9846 11784 16515 1982 1324 6017 2025 320 1116 6897 5289 2607 3999 3405 3869 3937 3629 2973 2707 3807 3682 4023 3782 3151 5790 5404 4282 ]
G [ 4131 4119 4002 4130 4116 3970 4004 4332 3947 4700 5295 4598 4316 3513 3517 3698 3818 5041 7220 2365 9662 1907 407 653 182 79 366 6394 8913 1176 15599 13138 2065 3964 5725 4744 4163 4359 4595 5108 6000 7128 4040 3015 3485 3696 5286 4091 3092 3927 ]
T [ 4356 4329 4456 4377 4398 4455 4375 4022 4768 4397 4019 4185 4403 3866 4625 3425 5403 3237 2511 5651 3570 1331 523 1870 4662 230 13404 2672 1468 10364 835 1724 4856 3750 2551 3814 4190 4243 4450 4315 3621 3212 4115 3225 4416 5937 4486 3358 3547 4068 ]

Hypothetical CWM

   
A [ 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.03 -0.00 -0.04 0.01 -0.06 -0.04 -0.04 0.06 -0.07 -0.03 -0.09 -0.05 -0.02 -0.00 0.02 0.01 0.01 0.01 -0.00 ]
C [ 0.01 0.02 0.02 -0.01 0.03 0.10 -0.02 0.11 0.16 0.10 0.13 0.18 0.02 -0.03 0.05 0.06 -0.04 -0.04 0.05 0.03 -0.01 0.01 0.01 0.01 0.00 ]
G [ 0.00 0.01 0.02 0.03 0.05 -0.01 0.10 -0.03 -0.04 -0.01 -0.08 -0.03 -0.02 0.05 0.12 -0.03 0.19 0.13 -0.02 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.01 -0.01 0.02 -0.01 -0.02 0.01 -0.01 -0.05 -0.06 -0.06 0.03 -0.07 0.10 -0.02 -0.02 0.04 -0.03 -0.01 0.03 -0.02 -0.03 -0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 968

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 798

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 195

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 161

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages