Detailed information of deep learning profile BP000267.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HCT116 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000267.1
Cell line/tissue: HCT116
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR446FOM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.02 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.18 0.09 0.06 0.15 0.09 0.00 0.04 0.01 -0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 4068 3547 3358 4486 5937 4416 3225 4115 3212 3621 4315 4450 4243 4190 3814 2551 3750 4856 1724 835 10364 1468 2672 13404 230 4662 1870 523 1331 3570 5651 2511 3237 5403 3425 4625 3866 4403 4185 4019 4397 4768 4022 4375 4455 4398 4377 4456 4329 4356 ]
C [ 3927 3092 4091 5286 3696 3485 3015 4040 7128 6000 5108 4595 4359 4163 4744 5725 3964 2065 13138 15599 1176 8913 6394 366 79 182 653 407 1907 9662 2365 7220 5041 3818 3698 3517 3513 4316 4598 5295 4700 3947 4332 4004 3970 4116 4130 4002 4119 4131 ]
G [ 4282 5404 5790 3151 3782 4023 3682 3807 2707 2973 3629 3937 3869 3405 3999 2607 5289 6897 1116 320 2025 6017 1324 1982 16515 11784 9846 15462 12055 1587 7215 4500 2553 4833 4366 4025 6146 4539 4564 3545 3649 4325 4445 4427 4523 4174 4088 4425 4568 4328 ]
T [ 4732 4966 3770 4086 3594 5085 7087 5047 3962 4415 3957 4027 4538 5251 4452 6126 4006 3191 1031 255 3444 611 6619 1257 185 381 4640 617 1716 2190 1778 2778 6178 2955 5520 4842 3484 3751 3662 4150 4263 3969 4210 4203 4061 4321 4414 4126 3993 4194 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 -0.03 -0.02 0.03 -0.01 -0.03 0.04 -0.02 -0.02 0.10 -0.07 0.03 -0.06 -0.06 -0.05 -0.01 0.01 -0.02 -0.01 0.02 -0.01 0.01 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.02 0.13 0.19 -0.03 0.12 0.05 -0.02 -0.03 -0.08 -0.01 -0.04 -0.03 0.10 -0.01 0.05 0.03 0.02 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.01 -0.01 0.03 0.05 -0.04 -0.04 0.06 0.05 -0.03 0.02 0.18 0.13 0.10 0.16 0.11 -0.02 0.10 0.03 -0.01 0.02 0.02 0.01 ]
T [ -0.00 0.01 0.01 0.01 0.02 -0.00 -0.02 -0.05 -0.09 -0.03 -0.07 0.06 -0.04 -0.04 -0.06 0.01 -0.04 -0.00 -0.03 -0.05 -0.01 0.02 -0.03 0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 968

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 798

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 195

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 161

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages