Detailed information of deep learning profile BP000266.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000266.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR445NJB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.11 -0.00 0.04 0.01 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.19 0.13 -0.00 0.06 0.02 -0.00 0.01 0.00 -0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 4218 5579 6874 5323 4232 4776 4261 4564 5168 5171 5335 5490 4785 3322 4930 5583 2501 1322 12601 1845 3601 16460 431 7904 1608 444 650 3527 8308 1966 3126 7269 3614 6031 4656 5376 4804 4675 5438 6469 4521 5420 5605 5957 5638 5497 5472 5456 5466 5228 ]
C [ 5431 6256 4615 4434 3971 5317 7797 7065 6297 5787 5526 5063 5587 6965 4686 2742 15098 19107 1415 10862 7606 604 96 187 852 127 1022 14796 1278 10644 6869 5057 4536 4067 3924 5547 6742 7661 6527 4542 5682 5010 4897 4824 4929 5121 5333 5309 5229 5359 ]
G [ 6607 4280 5054 5008 4824 4949 3718 4127 4775 5176 4971 4528 5239 3524 6530 8933 1839 378 3752 7568 1943 2341 20419 12833 11878 20277 17803 880 10301 6131 2230 6203 5336 4629 8598 5784 5344 3473 3696 5581 5771 5700 5567 4958 4937 5697 5647 5489 5438 5609 ]
T [ 4924 5065 4637 6415 8153 6138 5404 5424 4940 5046 5348 6099 5569 7369 5034 3922 1742 373 3412 905 8030 1775 234 256 6842 332 1705 1977 1293 2439 8955 2651 7694 6453 4002 4473 4290 5371 5519 4588 5206 5050 5111 5441 5676 4865 4728 4926 5047 4984 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.01 -0.02 -0.01 0.02 -0.01 -0.02 0.04 -0.02 -0.01 0.10 -0.04 0.06 -0.07 -0.04 -0.05 -0.01 0.03 -0.02 -0.02 0.04 -0.02 0.02 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.01 0.13 0.20 -0.00 0.13 0.07 0.02 -0.02 -0.06 0.01 -0.04 -0.03 0.16 -0.01 0.09 0.06 0.04 0.02 0.02 0.01 0.03 ]
G [ 0.01 0.02 0.01 0.02 0.01 0.05 0.07 -0.02 -0.02 0.09 0.06 -0.01 0.04 0.20 0.15 0.12 0.20 0.15 -0.03 0.15 0.06 -0.00 0.04 0.03 0.01 0.05 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.08 -0.03 -0.05 0.07 -0.03 -0.03 -0.08 0.03 -0.04 0.01 -0.02 -0.07 -0.01 0.04 -0.04 0.03 0.02 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1753

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 409

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 392

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 195

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 144

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages